Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0022
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    29   3.2  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    29   4.2  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    28   5.6  
02_01_0489 - 3522907-3523363,3523519-3523610,3525755-3526171,352...    28   7.4  
05_03_0427 - 13886814-13887935                                         25   8.5  
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460...    27   9.7  
07_01_0942 + 7957776-7958004,7958113-7958708                           27   9.7  
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635           27   9.7  

>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 316  DRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYS-----QHASHPSDHSLIYHDADVGA 480
            DR  S + S S+ GRTG + PT    +   PSP       Q   HPS  S+  H A  GA
Sbjct: 2137 DRRPS-LGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSM--HSAGWGA 2193


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 304 LDELDRESSPVSSWSNV-GRTGDVLPTPLSNVETRP 408
           +D L     P+SS+S + G   D LP+P SNV  RP
Sbjct: 855 VDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRP 890


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 328 SPVSSWSNVGRTGDVLPTPLSNVETR-PSPYSQHASHPSDHSLIYHDADV 474
           +PVSS+   GR   + PTP +N + R P P S H          YH+ ++
Sbjct: 505 TPVSSFQR-GRAVTMTPTPQNNPQRRPPPPPSPHVPVFKPEEPTYHEYEL 553


>02_01_0489 -
           3522907-3523363,3523519-3523610,3525755-3526171,
           3526488-3526565,3527021-3527292,3529346-3529541
          Length = 503

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 349 NVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 477
           N G   +VLP   S+   +PSP S +AS  +D    YH    G
Sbjct: 236 NHGGYEEVLPCFSSSHHQQPSPASMNASAAADDDQDYHHLSEG 278


>05_03_0427 - 13886814-13887935
          Length = 373

 Score = 25.0 bits (52), Expect(2) = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 482 WLQWVPWLSTDYDLRRRSW 538
           WLQW+PW    Y+   +S+
Sbjct: 119 WLQWLPWSEYCYNTSFQSF 137



 Score = 21.0 bits (42), Expect(2) = 8.5
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 467 RMWVRWLQW 493
           R W++WL W
Sbjct: 117 RSWLQWLPW 125


>09_06_0201 -
           21545189-21545494,21545593-21545743,21545835-21546072,
           21546158-21546365,21546446-21546639,21546721-21546819,
           21546886-21546922,21548242-21548775
          Length = 588

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 73  NFTGNIVGAYSGTNS*AFYNQGNVKIPSQVGK*TWQ 180
           N TG   GA +G  +    N GN+ + S  G   WQ
Sbjct: 116 NVTGGAAGAGNGNTTAVLMNTGNLVVRSPNGTALWQ 151


>07_01_0942 + 7957776-7958004,7958113-7958708
          Length = 274

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 602 QNGDGKVEDLKTEEGQQISRFPTSGAVDHNQLRAMVPTVTIAPTSASWY 456
           +NGD     + T +G+ +S    S A       A  PT   APT  SW+
Sbjct: 16  ENGDNDYPLVATSDGEAVSSPSPSAA-------ASTPTAASAPTGGSWW 57


>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
          Length = 603

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 25/69 (36%), Positives = 28/69 (40%)
 Frame = -2

Query: 284 IAAKTPSATRAGTGAMIPG*LCQSEHVGRSSIATHCHVHFPTWDGILTLPWL*NAQELVP 105
           + A TP  T  GTGA  PG     E VG           F +     TL  L   +E  P
Sbjct: 254 LMANTPRLTHLGTGAFRPG--DGPEDVGLD--IEQMASAFASAGRTNTLVSLSGFREFEP 309

Query: 104 EYAPTIFPV 78
           EY PTI  V
Sbjct: 310 EYLPTIAAV 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,073
Number of Sequences: 37544
Number of extensions: 407691
Number of successful extensions: 1211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)