Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0022
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   3.3  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   7.5  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              27   9.9  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 191 CCFCLHVRTGTIILGSWHLFL 253
           CC C+ VR GTI+LG  HLF+
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFI 40


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 376 AVHLQCAPHCSMNSLGMTHGPVHPAIEDHAQSLLKLLVPLG 254
           +VHLQ  P    N +   H  V P I  HAQ  L+L VP G
Sbjct: 299 SVHLQWKPPFKPNGVIGYHVDVWPTINGHAQQ-LRLSVPHG 338


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 376 PTPLSNVETRPSPYSQHASHPSDHS 450
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 322 ESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSD 444
           +S+PV   S V     + P   +  +T+P+P  Q AS  SD
Sbjct: 474 QSNPVPEVSQVAPKASLAPKANALPQTKPTPQDQDASGDSD 514


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 473 TSASWYIRLWSLGCEAC*EYGLGRVSTFDSGVGSTSPVRPTLLH 342
           T A+W       G   C   G+G +   +SG+GS  P  P  LH
Sbjct: 633 TLANWITFPIFFGQLTCAYEGIGCIIPIESGMGSNRPRFPLYLH 676


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,168,994
Number of Sequences: 59808
Number of extensions: 441352
Number of successful extensions: 1484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)