Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0022
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.48 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 602 QNGDGKVEDLKTEEGQQISRFPTSGAVDHNQLRAMVPTVTIAPT 471
           ++ DG V  L+ E+ +    +PTS A D +  +     V +  T
Sbjct: 306 EDADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVALDRT 349


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 117 RVSSRICTDYISSEIQNYY-ESNFLKKLTVKFQFIE 13
           ++ S +  +YIS+ I NY  ++N+ KKL     +IE
Sbjct: 80  KIISSLSNNYISN-ISNYNNDNNYNKKLYYNINYIE 114


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 117 RVSSRICTDYISSEIQNYYESN-FLKKLTVKFQFIE 13
           ++ S +  +YIS+ I NY  +N + KKL     +IE
Sbjct: 80  KIISSLSNNYISN-ISNYNNNNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 117 RVSSRICTDYISSEIQNYYESN-FLKKLTVKFQFIE 13
           ++ S +  +YIS+ I NY  +N + KKL     +IE
Sbjct: 318 KIISSLSNNYISN-ISNYNNNNNYNKKLYYNINYIE 352


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 69  NYYESNFLKKLTVKFQFIE 13
           NYY +N  KKL     +IE
Sbjct: 316 NYYNNNNYKKLYYNINYIE 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,006
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)