Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0022
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   3.5  
At4g03100.1 68417.m00418 rac GTPase activating protein, putative...    28   4.7  
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to...    28   6.1  
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to...    28   6.1  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    28   6.1  
At1g27090.1 68414.m03302 glycine-rich protein                          28   6.1  
At4g32630.1 68417.m04645 hypothetical protein                          27   8.1  
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea...    27   8.1  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    27   8.1  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    27   8.1  

>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 207 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 106
           C QK+  H  P++LP    +L+ A V++C++  S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332


>At4g03100.1 68417.m00418 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 3 [Lotus
           japonicus] GI:3695063; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 430

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 421 QHASHPSDHSLIYHDADVGAMVTVGTMALN*L*STAPLVGNRLI 552
           QH  H S HS    + D+G++ ++    LN L + A  V N  I
Sbjct: 359 QHQEHLSRHSTHEDETDIGSLCSIEKCFLNQLNNNAARVSNTSI 402


>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 305

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 250
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 97  ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143


>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 250
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 523 TAPLVGNRLICCPSSVFRSSTLPSP 597
           T  ++GN LIC P +V   S +P P
Sbjct: 193 TFKVIGNALICGPKAVSNCSAVPEP 217


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 366 RCTAHTTVKCGNSSQPILSTCFTS 437
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 325 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSL 453
           +SP ++ ++ G +G V+P    N+ T+ +    +   PSD S+
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSM 403


>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 523

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 298 RLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 477
           ++L  L   S  V+S   VG T D++ T  S+   R    S+  ++ S H+L  H A+V 
Sbjct: 255 QILSTLTGHSKKVTSIKFVGDT-DLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVR 313

Query: 478 AMVTVGT 498
           A+    T
Sbjct: 314 AVTVHAT 320


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 152 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 250
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 152 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 250
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,422
Number of Sequences: 28952
Number of extensions: 313345
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)