Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0020
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 127 5e-31
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 124 5e-30
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.34
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 2.4
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 3.1
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 24 7.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 9.5
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.5
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 127 bits (307), Expect = 5e-31
Identities = 55/78 (70%), Positives = 66/78 (84%)
Frame = +3
Query: 21 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 201 MFQLPKLYAKLHYCVSCA 254
+ +PKLY KL YCVSCA
Sbjct: 61 EYTIPKLYIKLQYCVSCA 78
Score = 35.1 bits (77), Expect = 0.004
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +2
Query: 254 LHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 361
+HS+VVR RS++ RRIRT PP+ + RD + P AV +
Sbjct: 79 IHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 124 bits (299), Expect = 5e-30
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +3
Query: 21 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 201 MFQLPKLYAKLHYCVSCASTAKL 269
+ +PK+Y KL YCVSCA A++
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARV 83
Score = 34.7 bits (76), Expect = 0.005
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +2
Query: 254 LHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 361
+H++VVR RS++ RRIRT PP+ + RD R P A+ +
Sbjct: 79 IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.34
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 102 RCVPKDKAIKKFVIRNIVEAAAVRDI 179
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 2.4
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +3
Query: 108 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY--AKLHYCVSCASTAKLSGTD 281
+PKDKA++ RN + A I DA + + + + +K S KL+
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKP 226
Query: 282 RRKTEESVLLPRVTSLGTCHVHRQXKGSDLLLN 380
+ ++ +P T + ++RQ SD+ N
Sbjct: 227 QVTAKDQNAMPS-TGISGFEINRQKDTSDMKRN 258
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 161 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 42
+ +DV + +L + + L P+A+C + ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 267 LSGTDRRKTEESVLLPRVTSLGT 335
++ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 248 MRLHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 343
MR + + IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 96 CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 191
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = -1
Query: 77 FNVTTSMLGASSITAL---TSHVSN 12
FN+ TS +SS+T+ +SH+SN
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISN 124
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 15 RNMTRKRRNGGRAKHG 62
R R RR GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,816
Number of Sequences: 5004
Number of extensions: 24630
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -