Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0020
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             152   1e-37
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   7.2  
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         27   7.2  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.2  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  152 bits (368), Expect = 1e-37
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 201 MFQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLP 314
           ++ LPKLY KLHYCVSCA  +K+   +R K +  +  P
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVV-RNRSKEDRKIRTP 97



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPP 313
           +HSKVVRNRSK+DR+IRTPP
Sbjct: 79  IHSKVVRNRSKEDRKIRTPP 98


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 21   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
            M  ++ N    K+ R     +  TNC      +K   K   +NI+   +  D  D+S+YP
Sbjct: 1819 MLYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
 Frame = -1

Query: 203 HWVYRGIVN------ISDRRRFYDVPNHELFDGLVLWH-APRAVCA 87
           H+  RGI N      +S+RR+F  V N E  D +VL H  P+A C+
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCS 485


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 108 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 221
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,267,096
Number of Sequences: 59808
Number of extensions: 204561
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)