Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0020
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNC 98
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNC 98
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNC 98
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 379 FNNKSLPLXCLW 344
           F NKSLP+  +W
Sbjct: 48  FKNKSLPVIEIW 59


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 249 CASTAKLSGTDRRKTEESVL 308
           C+S   L G D R+  E+ L
Sbjct: 395 CSSLLNLPGNDARRRVEAAL 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,038
Number of Sequences: 438
Number of extensions: 1778
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)