Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0020
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   130   2e-31
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           128   1e-30
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           128   1e-30
At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger) fa...    27   3.4  
At5g58450.1 68418.m07320 expressed protein predicted proteins fr...    27   4.5  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   4.5  
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim...    26   7.8  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    26   7.8  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  130 bits (315), Expect = 2e-31
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 201 MFQLPKLYAKLHYCVSCA 254
            + LPKLYAK  YCVSCA
Sbjct: 61  GYTLPKLYAKTQYCVSCA 78



 Score = 34.3 bits (75), Expect = 0.029
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 358
           +HS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 79  IHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  128 bits (310), Expect = 1e-30
 Identities = 54/78 (69%), Positives = 64/78 (82%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 201 MFQLPKLYAKLHYCVSCA 254
            + LPKLYAK  YCVSCA
Sbjct: 61  GYTLPKLYAKTQYCVSCA 78



 Score = 33.1 bits (72), Expect = 0.068
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 358
           +HS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 79  IHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  128 bits (310), Expect = 1e-30
 Identities = 54/78 (69%), Positives = 64/78 (82%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 201 MFQLPKLYAKLHYCVSCA 254
            + LPKLYAK  YCVSCA
Sbjct: 61  GYTLPKLYAKTQYCVSCA 78



 Score = 33.1 bits (72), Expect = 0.068
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 358
           +HS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 79  IHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger)
           family protein contains Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 191

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 69  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVS 248
           H+++     C    P D+   K   R+       +  +D+S+Y + +  KL   +   V+
Sbjct: 90  HIESRLLEGCVPRCPHDQCEYKLTFRSCANLLTPKTKSDSSIYLLLKTLKLGDVVSNAVN 149

Query: 249 -CASTAKLSG 275
             ASTAK  G
Sbjct: 150 PFASTAKFHG 159


>At5g58450.1 68418.m07320 expressed protein predicted proteins from
           D.melanogaster, C.elegans and S.pombe
          Length = 1065

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +1

Query: 133 SS*LGTS*KRRRSEILTMPLYTQCXXXXXXXXXXXXACHAPPQQSCQEQIEERQKNPYSS 312
           S+ +G+   +   ++ T P +T C              + PP+++ +E+ EE  K     
Sbjct: 711 SNEIGSRTLKFNEDMQTRPWWTPCPEKNYLLGPFEEISYCPPKENVKEEREENMKRAIQR 770

Query: 313 QE*LP 327
           +  LP
Sbjct: 771 KSLLP 775


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 78  AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 221
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 587

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  DVVTLKP*DAQTARGACQRTRPSKS 135
           DVVTL    A+T RG C   RP KS
Sbjct: 204 DVVTLADRLAETYRGFCIPPRPDKS 228


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 81  VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAS 257
           V C N  +    +     F +++ ++AAA R I    V  + Q  K++  L+ C +  S
Sbjct: 90  VLCINKLKLTISENEEDGFYLKSWIDAAAKRKIQHLDVQFLPQFHKIHFNLYKCEALVS 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,792,352
Number of Sequences: 28952
Number of extensions: 140600
Number of successful extensions: 366
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)