Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0013
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    28   5.1  
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114...    27   8.9  

>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 66  WMDELTAHLFVKWLLEPKDIHNVN 137
           W D +TA L    LLEPKD+  +N
Sbjct: 498 WKDPITAALAQSGLLEPKDVDPLN 521


>05_01_0166 +
           1145829-1145971,1146211-1146235,1147330-1147425,
           1147544-1147645,1147767-1147889,1147996-1148622,
           1148710-1148883,1148965-1149181,1149312-1149394,
           1149478-1149573,1149676-1149724,1149850-1150088,
           1150547-1150618,1150694-1150804,1150930-1151282,
           1151377-1151464,1151691-1151789,1151860-1151991,
           1152119-1152222,1153179-1153215,1153334-1153367,
           1153451-1153467
          Length = 1006

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 430 FCILIFIYNIYLNFCGRDINNFVXHVIIDGNRKFCKFYT 314
           FC+  +   +Y   C    ++F   V++D +   CKF+T
Sbjct: 814 FCVTAYDRQLYNAVCKISKSSFQDKVVVDIDGVHCKFFT 852


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,066
Number of Sequences: 37544
Number of extensions: 192054
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)