Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0013
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19) 29 2.3
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 29 4.0
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 29 4.0
SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33) 29 4.0
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 29 4.0
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 29 4.0
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_35360| Best HMM Match : rve (HMM E-Value=0.014) 29 4.0
SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_13114| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21) 29 4.0
SB_6403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19) 28 6.9
>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
Length = 698
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 219 YCLEGWPPIMPSLPLLKSYWEKKQHLT 245
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 875 YCLEGWPPIMPSLPLLKPYWEKKQHLT 901
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 812 YCLEGWPPIMPSLPLLKPYWEKKQHLT 838
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 882 YCLEGWPPIMPSLPLLKPYWEKKQHLT 908
>SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)
Length = 829
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 590 YCLEGWPPIMPSLPLLKPYWEKKQHLT 616
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 767 YCLEGWPPIMPSLPLLKPYWEKKQHLT 793
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 169 YCLEGWPPIMPSLPLLKPYWEKKQHLT 195
>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 350 YCLEGWPPIMPSLPLLKPYWEKKQHLT 376
>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 535 YCLEGWPPVMPSLPLLKPYWEKKQHLT 561
>SB_35360| Best HMM Match : rve (HMM E-Value=0.014)
Length = 247
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 45 YCLEGWPPIMPSLPLLKPYWEKKQHLT 71
>SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 456 YCLEGWPPIMPSLPLLKPYWEKKQHLT 482
>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1963
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 1559 YCLEGWPPIMPSLPLLKPYWEKKQHLT 1585
>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 1048 YCLEGWPPIMPSLPLLKPYWEKKQHLT 1074
>SB_13114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 159 YCLEGWPPIMPSLPLLKPYWEKKQHLT 185
>SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)
Length = 521
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P+ LL YW K T
Sbjct: 394 YCLEGWPPIMPSLPLLKPYWEKKQHLT 420
>SB_6403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LEMTF*AKFQNCFVRV*MYHNYFSNV 307
L +TF + +NC V+ HNY+SN+
Sbjct: 2 LSITFCRQMENCNVKDMFCHNYYSNI 27
>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
Length = 1065
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 YCLDGWTSSQPTC-LLSGYWSPKTFTT 132
YCL+GW P LL YW K T
Sbjct: 558 YCLEGWPPIMPCLPLLKPYWEKKQHLT 584
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,468
Number of Sequences: 59808
Number of extensions: 262764
Number of successful extensions: 435
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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