Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0013
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical...    32   0.28 
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    29   2.0  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    29   3.5  

>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
           protein Y53F4B.21 protein.
          Length = 1099

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +1

Query: 238 DILSKISKLFRPGLNVSQLFLKCIKLYKT 324
           D    I+KL + GL+VS+LFLKCI++ +T
Sbjct: 388 DQTEAITKLPQWGLDVSELFLKCIRILET 416


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 608 VFKITFIIYENIILAPKCHIGDF*ICND-VL*FFMAHXXXXXXXXNKIITLH*WALY 441
           V  +TFII+   + A   H+  F +    +L FF  H         K++  H W LY
Sbjct: 106 VILVTFIIFAQYLCAEAFHLTIFLLAAQRLLVFFFPHTEKQVARFQKLMAKHIWYLY 162


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 293 NCDTFKPGRNNFEILLRMSFQGLFDTLSEYNK*YSRCNYTETLELIPQ 150
           +C+ +    NNFE  +     GLF     Y+K  +RC+Y E +E  P+
Sbjct: 799 DCEDYYISCNNFETTINRCPAGLF-----YSKLNNRCDYKEHVEDCPE 841


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,832
Number of Sequences: 27780
Number of extensions: 211089
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)