Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0013
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    30   0.021
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    30   0.021
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.59 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 29.9 bits (64), Expect = 0.021
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 235 NDILSKISKLFRPGLNVSQLFLKCIKL 315
           +D+LS  +KL RP +N S +   CIKL
Sbjct: 34  DDLLSNYNKLVRPVVNTSDVLRVCIKL 60


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 29.9 bits (64), Expect = 0.021
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 235 NDILSKISKLFRPGLNVSQLFLKCIKL 315
           +D+LS  +KL RP +N S +   CIKL
Sbjct: 34  DDLLSNYNKLVRPVVNTSDVLRVCIKL 60


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 235 NDILSKISKLFRPGLNVSQLFLKCIKL 315
           +D+LS  +KL RP +NV+      IKL
Sbjct: 30  DDLLSNYNKLVRPVVNVTDALTVKIKL 56


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 188 RCNYTETLELIPQDGW 141
           RCN T     I  DGW
Sbjct: 363 RCNATGAFSWIGSDGW 378


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  LTAHLFVKWLLEPKDI 125
           L  H+  +W++EP D+
Sbjct: 700 LVVHVPPRWIVEPTDV 715


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,945
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)