Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0010
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 34 0.017
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 30 0.28
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 30 0.28
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 30 0.37
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 29 0.64
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 28 1.5
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 2.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.6
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.5
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.0
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.9
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.9
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 34.3 bits (75), Expect = 0.017
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +2
Query: 416 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
+R +H + E++RR+AI +G L ++VP C++
Sbjct: 89 KRLSHKEVERRRREAISEGIKELANIVPGCEK 120
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 338 SSSNQNTEDEDDSGDNKASALSFKERR--REAHTQAEQKRRDAIKKGYDSLQDLV 496
+S N + + DDSGD S L+ ++ + + QA QK R KK +LQD V
Sbjct: 99 ASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQV 153
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +2
Query: 317 QNIHQTPSSSNQNTEDEDDSGD--NKASALSFKERRREAHTQ-----AEQKRRDAIKKGY 475
Q + + ++++ D DDS D NK S +S K R+ E+++Q + + D
Sbjct: 105 QELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSE 164
Query: 476 DSLQDLVPTCQRVMRLATNQAKLQSFRNQ 562
D Q L+ + + + + LQ +N+
Sbjct: 165 DETQQLLRELENIKQERKREQMLQEEKNR 193
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 335 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVP 499
PS+ + +D DD N S+ S K + + TQA + + D + G + +D +P
Sbjct: 87 PSTDKKKKKDNDDFKQNLKSS-SNKTEEKYSATQASKSKNDEFELGGEENEDEMP 140
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 302 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 457
S+G+ + QTP+S +N EDE+ K RR Q ++K+ D
Sbjct: 44 STGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVK--RRNLRNQKKKKKTD 93
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +2
Query: 383 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMR-----LATNQAKLQ 547
+K + +SFK+++ E +Q+ Q + YD+ + + T + ++ + ++++L+
Sbjct: 953 DKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLR 1012
Query: 548 SFRNQLTTSSICYNSVV---DREEERMHCVK 631
F N L + + +V + E ++M+ VK
Sbjct: 1013 EFENALWDINSSIDELVKFIEFESKQMNSVK 1043
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 326 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ---KRRDAIKKGYDSLQ 487
+ P N +T DED S + S+ REA++ A + +RR +DSL+
Sbjct: 974 YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLK 1030
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 478
GS S++ S+++ DED+ DNK ++R+ + ++ +KR I Y+
Sbjct: 231 GSDQSMETSESEEEESSESESDEDEDEDNKG---KIRKRKTDDAKKSRKKRAPHIHIEYE 287
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 302 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAI-KKGYD 478
+SGS+ + +PS + EDE+D+ S E + + + AI +K D
Sbjct: 81 NSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMD 140
Query: 479 SLQDLV 496
L+ ++
Sbjct: 141 RLKKII 146
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 598 YDAVVTNTGCSQLISEGLQLCLVCSQTHHSLTSRHKVLE*IIAFLNCI 455
Y VTNT Q + LC++ Q L RH E +I L+C+
Sbjct: 1912 YSIPVTNT--KQSLLRSAILCVISLQRLRLLGQRHSFCEEVIENLSCV 1957
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 251 IKFHYNN*YPNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDN 385
+ FH P + + + T SS N ++ EDDSG++
Sbjct: 40 LPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGED 84
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 326 HQTPSSSNQNTEDEDDSGDNKASALS 403
+ TP S + ED+D +G NK +A S
Sbjct: 365 NNTPMSEKRKREDDDANGPNKFAARS 390
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 457
G SG + + S+ ++++ D+ D+ LS ERR + +QK++D
Sbjct: 378 GYSGYVAGLSSRDPDSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQD 430
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 488 DLVPTCQRVMRLATNQAKLQSFRNQLTTSSICYNSVVDREEERM 619
+L PT V+ L N+ S R +T + N ++D ER+
Sbjct: 456 ELTPTVANVISLDENKELFTSVRMLITIGELLTNRIIDFWGERL 499
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/95 (20%), Positives = 37/95 (38%)
Frame = +2
Query: 293 RCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKG 472
R SS I + TPSSS+ ++ S +K+S+ S + +++ + K
Sbjct: 140 RTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199
Query: 473 YDSLQDLVPTCQRVMRLATNQAKLQSFRNQLTTSS 577
S + ++++ SF T +S
Sbjct: 200 SSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPAS 234
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 404 FKERRREAHTQAEQKRRDAIKKGYDSLQDLV 496
+KE R HT + ++A++K D L LV
Sbjct: 4 YKELARRLHTLQSKNEKEALEKQIDFLDKLV 34
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 275 YPNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGD 382
YP + + SS +T S +++NT+++ D D
Sbjct: 716 YPEILEKLSSSSGSDEFLETSSRTSENTKEKIDKDD 751
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,869
Number of Sequences: 5004
Number of extensions: 53556
Number of successful extensions: 218
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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