Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0010
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 43 2e-04
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 42 4e-04
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 42 5e-04
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 42 5e-04
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 42 5e-04
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 42 5e-04
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr... 41 0.001
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr... 41 0.001
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 40 0.001
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 40 0.001
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 40 0.001
At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family pr... 39 0.003
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 39 0.004
At4g27120.2 68417.m03898 expressed protein 39 0.004
At4g27120.1 68417.m03897 expressed protein 39 0.004
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr... 38 0.005
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 38 0.008
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 38 0.008
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 37 0.011
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 37 0.011
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 37 0.011
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 37 0.011
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 37 0.011
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 36 0.026
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 36 0.026
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 36 0.034
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr... 36 0.034
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 35 0.060
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 35 0.060
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 34 0.079
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 34 0.10
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 34 0.10
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 34 0.10
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 33 0.14
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 33 0.14
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 33 0.24
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 33 0.24
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 33 0.24
At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family pr... 32 0.32
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 32 0.42
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 32 0.42
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 32 0.42
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 31 0.56
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 31 0.56
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 31 0.73
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 31 0.73
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 31 0.97
At3g29075.1 68416.m03637 glycine-rich protein 31 0.97
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 31 0.97
At3g28770.1 68416.m03591 expressed protein 30 1.3
At2g44200.1 68415.m05500 expressed protein 30 1.3
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 30 1.7
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 29 2.2
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 29 2.2
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 29 2.2
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 29 3.0
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 29 3.0
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 29 3.0
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 29 3.0
At5g63720.1 68418.m07998 hypothetical protein 29 3.9
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2... 29 3.9
At3g30725.1 68416.m03909 expressed protein ; expression supporte... 29 3.9
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 29 3.9
At2g21940.2 68415.m02607 shikimate kinase, putative similar to s... 28 5.2
At2g21940.1 68415.m02606 shikimate kinase, putative similar to s... 28 5.2
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 5.2
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 6.8
At3g21480.1 68416.m02710 transcription activation domain-interac... 28 6.8
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 27 9.0
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 9.0
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 9.0
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 27 9.0
At2g27690.1 68415.m03355 cytochrome P450, putative similar to Cy... 27 9.0
At2g20310.1 68415.m02372 expressed protein 27 9.0
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 27 9.0
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 27 9.0
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 9.0
At1g42990.1 68414.m04949 bZIP transcription factor family protei... 27 9.0
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 27 9.0
At1g14687.1 68414.m01755 zinc finger homeobox family protein / Z... 27 9.0
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGY 475
GS + + H + S EDE++ S++S K R A H Q+E+KRRD I +
Sbjct: 174 GSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRM 233
Query: 476 DSLQDLVPTCQR 511
+LQ LVP +
Sbjct: 234 KTLQKLVPNSSK 245
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASA---------LSFKERRREA---HTQAE 442
GS G ++ SS E D GDNK A + + RR +A H+ AE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206
Query: 443 QKRRDAIKKGYDSLQDLVPTCQRV 514
+ RR+ I + LQDLVP C R+
Sbjct: 207 RARREKISERMTLLQDLVPGCNRI 230
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 317 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 484
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 485 QDLVPTCQRV 514
QDLVP C +V
Sbjct: 253 QDLVPGCDKV 262
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 317 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 484
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 485 QDLVPTCQRV 514
QDLVP C +V
Sbjct: 253 QDLVPGCDKV 262
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Frame = +2
Query: 290 PRCGSSGSIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQ 445
P S S++ H + ++ED E++SGD + A S + R E H +E+
Sbjct: 294 PSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSER 353
Query: 446 KRRDAIKKGYDSLQDLVPTCQRV 514
+RRD I + +LQ+L+P C +V
Sbjct: 354 RRRDRINEKMRALQELIPNCNKV 376
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Frame = +2
Query: 290 PRCGSSGSIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQ 445
P S S++ H + ++ED E++SGD + A S + R E H +E+
Sbjct: 294 PSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSER 353
Query: 446 KRRDAIKKGYDSLQDLVPTCQRV 514
+RRD I + +LQ+L+P C +V
Sbjct: 354 RRRDRINEKMRALQELIPNCNKV 376
>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 337
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 320 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 487
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 488 DLVPTCQRV 514
D+VP C +V
Sbjct: 216 DIVPGCNKV 224
>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 335
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 320 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 487
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 488 DLVPTCQRV 514
D+VP C +V
Sbjct: 216 DIVPGCNKV 224
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 356 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
T +D + NK+S S RR E H +E++RRD I + +LQ+L+P C R
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR 288
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 356 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
T +D + NK+S S RR E H +E++RRD I + +LQ+L+P C R
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR 288
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 308 GSIQNIHQTPSSSNQNTEDEDDSGDNKASA---LSFKERRREAHTQAEQKRRDAIKKGYD 478
G I+ T S+N + E +D A ++ ++R E H E+KRRD K
Sbjct: 191 GDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMR 250
Query: 479 SLQDLVPTCQR 511
+LQDL+P C +
Sbjct: 251 ALQDLLPNCYK 261
>At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 261
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +2
Query: 320 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQD 490
NI +SS + ++ + + + + RR +A H+ AE+ RR I + LQD
Sbjct: 119 NISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQD 178
Query: 491 LVPTCQRVMRLATNQAKL----QSFRNQL 565
+VP C + M +AT ++ QS +NQ+
Sbjct: 179 IVPGCYKTMGMATMLDEIINYVQSLQNQV 207
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 335 PSSSNQNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKKGYDSLQDLVPTCQ 508
P++ ++ E+ G +A + ++R R E H AE++RR+ I + +LQ L+P C
Sbjct: 227 PATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCN 286
Query: 509 RV 514
+V
Sbjct: 287 KV 288
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 478
G+S S N+ + S S EDED++G +A A KE++R+ +A+++ +A ++ +
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQ-EREAQRQAEEATRESRN 120
Query: 479 SLQD 490
+ QD
Sbjct: 121 TKQD 124
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 478
G+S S N+ + S S EDED++G +A A KE++R+ +A+++ +A ++ +
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQ-EREAQRQAEEATRESRN 120
Query: 479 SLQD 490
+ QD
Sbjct: 121 TKQD 124
>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 260
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +2
Query: 359 EDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLATNQA 538
E+ED+ + + + ++H+ AE+ RR I + LQD+VP C + M +AT
Sbjct: 133 EEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLD 192
Query: 539 KL----QSFRNQL 565
++ QS +NQ+
Sbjct: 193 EIINYVQSLQNQV 205
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 338 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
+++++ +++ + S S K R E H +E+KRRD I + +LQ+L+P C +
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK 316
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 338 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
+++++ +++ + S S K R E H +E+KRRD I + +LQ+L+P C +
Sbjct: 187 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK 245
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 341 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQD+VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 512 V 514
V
Sbjct: 180 V 180
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 341 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQD+VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 512 V 514
V
Sbjct: 180 V 180
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 37.1 bits (82), Expect = 0.011
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Frame = +2
Query: 311 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKE------RRREA---HTQAEQKRRDAI 463
S + I + S + + +++GD S +K+ RR +A H+ AE+ RR+ I
Sbjct: 221 SSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKI 280
Query: 464 KKGYDSLQDLVPTCQRVMRLATNQAKL----QSFRNQLTTSSICYNSVVDREEERMHCVK 631
+ LQDLVP C +V A ++ QS + Q+ S+ +SV R + M +
Sbjct: 281 SERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALL 340
Query: 632 MLSLF 646
+F
Sbjct: 341 SKDIF 345
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 383 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
N+ S + + R E H +E++RRD I + +LQ+L+P C +
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK 289
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 383 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
N+ S + + R E H +E++RRD I + +LQ+L+P C +
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK 289
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 35.9 bits (79), Expect = 0.026
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +2
Query: 317 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 472
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 268 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 327
Query: 473 YDSLQDLVPTCQRV 514
LQDLVP C +V
Sbjct: 328 MKFLQDLVPGCNKV 341
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 35.9 bits (79), Expect = 0.026
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +2
Query: 317 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 472
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 269 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 328
Query: 473 YDSLQDLVPTCQRV 514
LQDLVP C +V
Sbjct: 329 MKFLQDLVPGCNKV 342
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 341 SSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGYDSLQDLVPTCQRVM 517
S Q+TE ++ +A + + R A H ++E++RRD I + +LQ L+PT +
Sbjct: 141 SETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 200
Query: 518 RLA 526
+++
Sbjct: 201 KVS 203
>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 301
Score = 35.5 bits (78), Expect = 0.034
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +2
Query: 290 PRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDA 460
P+ G+ S + S N E K + + + RR +A H+ AE+ RR+
Sbjct: 103 PQRGNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREK 162
Query: 461 IKKGYDSLQDLVPTCQRV 514
I + LQ+LVP C ++
Sbjct: 163 ISERMRLLQELVPGCNKI 180
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 34.7 bits (76), Expect = 0.060
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +2
Query: 299 GSSGSIQNI-HQTPSSSNQNTEDEDDSGDN--KASALSFKERRREA---HTQAEQKRRDA 460
GS+ SI+ + H+ N + D K + + RR +A H+ AE+ RR+
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193
Query: 461 IKKGYDSLQDLVPTCQRV 514
I + LQDLVP C ++
Sbjct: 194 ISERMKFLQDLVPGCDKI 211
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLA 526
++H+ AE+ RR+ I + LQDLVP C + M +A
Sbjct: 113 DSHSLAERVRREKINERLKCLQDLVPGCYKAMGMA 147
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 34.3 bits (75), Expect = 0.079
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 278 PNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQK 448
PN R G + ++ + N+++E+ + K + + RR +A H+ AE+
Sbjct: 167 PNQNNRNGKRKDFEKKGKSSTKKNKSSEENE-----KLPYVHVRARRGQATDSHSLAERA 221
Query: 449 RRDAIKKGYDSLQDLVPTCQRVMRLA 526
RR+ I LQ+LVP C ++ A
Sbjct: 222 RREKINARMKLLQELVPGCDKIQGTA 247
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 335 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
PSS+ + D ++KASA+ R H+ EQ+RR I + + L++L+P ++
Sbjct: 25 PSSNTTVHSNRDSKENDKASAI------RSKHSVTEQRRRSKINERFQILRELIPNSEQ 77
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 341 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
S TE + + + + RR +A H+ AE+ RR+ I + LQDLVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 512 VM 517
V+
Sbjct: 175 VI 176
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 341 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQR 511
S TE + + + + RR +A H+ AE+ RR+ I + LQDLVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 512 VM 517
V+
Sbjct: 175 VI 176
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 347 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMR 520
NQ TE+ DS +K S R H +E++RR I + +LQ+L+P C + R
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDR 312
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 347 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMR 520
NQ TE+ DS +K S R H +E++RR I + +LQ+L+P C + R
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDR 312
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLATNQAKL----QSFRNQLTTSSICYN 589
++H+ AE+ RR+ I + LQDLVP C +V A ++ QS + Q+ S+ +
Sbjct: 310 DSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLS 369
Query: 590 SVVD 601
SV D
Sbjct: 370 SVND 373
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 278 PNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQK 448
PN R G + ++ + N+++E+ + K + + RR +A H+ AE+
Sbjct: 167 PNQNNRNGKRKDFEKKGKSSTKKNKSSEENE-----KLPYVHVRARRGQATDSHSLAERA 221
Query: 449 RRDAIKKGYDSLQDLVPTCQR 511
RR+ I LQ+LVP C +
Sbjct: 222 RREKINARMKLLQELVPGCDK 242
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 302 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKG 472
SSG + + SS + + +S +K + + RR +A H+ AE+ RR+ I
Sbjct: 153 SSGKRKEREKKVKSSTKKNKSSVES--DKLPYVHVRARRGQATDNHSLAERARREKINAR 210
Query: 473 YDSLQDLVPTCQRVMRLA 526
LQ+LVP C ++ A
Sbjct: 211 MKLLQELVPGCDKIQGTA 228
>At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 281
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVM 517
+ H+ AE+ RR+ I + +LQD++P C +++
Sbjct: 162 DRHSLAERARREKISEKMTALQDIIPGCNKII 193
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 419 REAHTQAEQKRRDAIKKGYDSLQDLVPTCQ 508
R H++ EQ+RR I + + SL D++P Q
Sbjct: 35 RSKHSETEQRRRSKINERFQSLMDIIPQNQ 64
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 335 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLV 496
P N N DED S DN+ S T A + ++ K+G D ++D++
Sbjct: 377 PDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVM 430
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 290 PRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKK 469
P ++ +H++ SSS+ ++E+E G+ + K+ +++ T+ E K + KK
Sbjct: 63 PEVKHESLLEKLHRSDSSSSSSSEEEGSDGEKRKK----KKEKKKPTTEVEVKEEE--KK 116
Query: 470 GY-DSLQDLVP 499
G+ + L++ +P
Sbjct: 117 GFMEKLKEKLP 127
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRV 514
++H+ AE+ RR+ I + +LQ+LVP C +V
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKV 175
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRV 514
++H+ AE+ RR+ I + +LQ+LVP C +V
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKV 175
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 347 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRV 514
+Q +++ + G +A S + + H AE+KRR+ + + + +L LVP +++
Sbjct: 126 HQKSDEFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKM 181
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKK 469
G+SG+ + + S + DE S + S+ S +R R E H +E++RR I +
Sbjct: 156 GASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINE 215
Query: 470 GYDSLQDLVPTCQR 511
+LQ L+P +
Sbjct: 216 KMKALQSLIPNSNK 229
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 478
GS G Q Q+ ++++ T K + + + + H+ AE+ RR+ I +
Sbjct: 100 GSGGQTQT--QSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMK 157
Query: 479 SLQDLVP 499
SLQ+LVP
Sbjct: 158 SLQELVP 164
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 478
G G I++ + PS ED+ D G K S + + ++ + ++K++D K G +
Sbjct: 121 GYGGRIESDYVKPSYGGH--EDDGDDGHKKHSGKDYDDGDEKSKKKEKEKKKDKKKDGNN 178
Query: 479 SLQD 490
S D
Sbjct: 179 SEDD 182
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLA 526
+ H+ AE+ RR+ I + SLQ+LVPT + R A
Sbjct: 153 DPHSIAERLRRERIAERIRSLQELVPTVNKTDRAA 187
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/54 (18%), Positives = 31/54 (57%)
Frame = +2
Query: 329 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQD 490
++ + ++ ED+ + DNK+ ++ ++ H +++ ++++ KK + L+D
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLED 1125
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 326 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 466
HQ SSS Q ++ E+DSG+ S ++ H + ++ R ++
Sbjct: 191 HQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRSDLE 237
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +2
Query: 278 PNMYPRCGSSGSIQNIH-QTPSSSNQNTEDEDDSGDNKA----SALSFKERRREA---HT 433
PN GS G + N QT + + +G A S + RR +A H+
Sbjct: 91 PNFQIPQGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHS 150
Query: 434 QAEQKRRDAIKKGYDSLQDLVP 499
AE+ RR+ I + +LQ+LVP
Sbjct: 151 IAERLRRERIAERMKALQELVP 172
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 422 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLA 526
+ H+ AE+ RR+ I + +LQ+LVPT + R A
Sbjct: 155 DPHSIAERLRRERIAERIRALQELVPTVNKTDRAA 189
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 377 GDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRV 514
G +A +L+ + + H AE+KRR+ + + + +L L+P +++
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKM 155
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 329 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKK 469
QTPS S Q +++ D A + KE E TQAE+ + + K+
Sbjct: 8 QTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKE 54
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 368 DDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLATNQAKLQ 547
D SG+ KA + R R+A + + ++K + + T +R+MR A +Q
Sbjct: 53 DISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQ 112
Query: 548 SFRNQLTTS 574
RN+ TS
Sbjct: 113 RPRNRTLTS 121
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +2
Query: 296 CGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRRDAIKK 469
C + G I + S NQ+ D + S L KE+R T + E ++ + K+
Sbjct: 247 CLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKTEEPKQ 306
Query: 470 GYDSLQDLVPTCQRVMRLATNQAKLQSFRNQLTTSSICYNSVVD 601
G + L + T + N+ + N + + NS D
Sbjct: 307 GEEKLSSVSTTTSQEPNKTCNEPEKPETENHHQQNCLVENSYED 350
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +2
Query: 296 CGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRRDAIKK 469
C + G I + S NQ+ D + S L KE+R T + E ++ + K+
Sbjct: 247 CLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKTEEPKQ 306
Query: 470 GYDSLQDLVPTCQRVMRLATNQAKLQSFRNQLTTSSICYNSVVD 601
G + L + T + N+ + N + + NS D
Sbjct: 307 GEEKLSSVSTTTSQEPNKTCNEPEKPETENHHQQNCLVENSYED 350
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 368 DDSGDNKASALSFKER--RREA--HTQAEQKRRDAIKKGYDSLQDLVPTCQRVMRLATNQ 535
D+SG+N+ + R EA H +AE++RR+ + + + +L+ +VP + M A+
Sbjct: 410 DESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISK-MDKASLL 468
Query: 536 AKLQSFRNQLTTSSICYNSVVDREEERM 619
S+ N+L V++ E ER+
Sbjct: 469 GDAVSYINELHAKL----KVMEAERERL 492
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 329 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQD 490
QTPS++ +EDE+ S + S + E TQAE + Y D
Sbjct: 272 QTPSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQND 325
>At4g12780.1 68417.m02005 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 485
Score = 28.7 bits (61), Expect = 3.9
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = +2
Query: 281 NMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 460
N YP SSG ++ T ++S +D D + K KERR + + +A + R
Sbjct: 17 NGYPD-PSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHA--KERREKENLKASRSREGD 73
Query: 461 IKKGYDSLQ-DLVPTCQRVMR-LATNQAKLQSFRNQLTTSSICYNSVVDREEERM 619
+ YDS + +L R+ R A +A+++ + + ++RE ER+
Sbjct: 74 HTENYDSRERELREKQVRLDRERAEREAEMEKAQEREKEEREREQKRIERERERL 128
>At3g30725.1 68416.m03909 expressed protein ; expression supported
by MPSS
Length = 111
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 326 HQTPSSSNQNT--EDEDDSGDNKASALS 403
HQ PSSS+ N ++EDD GD A ++
Sbjct: 39 HQKPSSSSNNNHMDEEDDVGDKDAKPIT 66
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 380 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVMR---LATNQAKLQS 550
D+ + E +H AE++RRD I +L+ LVP ++ + LAT +++
Sbjct: 51 DDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKE 110
Query: 551 FRNQLTTSSICYNSVVDREE 610
+ + S I + + +E
Sbjct: 111 LKQKAAESPIFQDLPTEADE 130
>At2g21940.2 68415.m02607 shikimate kinase, putative similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 304
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +2
Query: 368 DDSGDNKASALSFK------ERRREAHTQAEQK---RRDAIKKGYDSLQDLVPT 502
D+SGD A +++FK + R EA+T A + A K+GY ++ DL PT
Sbjct: 226 DESGD--AYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPT 277
>At2g21940.1 68415.m02606 shikimate kinase, putative similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 303
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +2
Query: 368 DDSGDNKASALSFK------ERRREAHTQAEQK---RRDAIKKGYDSLQDLVPT 502
D+SGD A +++FK + R EA+T A + A K+GY ++ DL PT
Sbjct: 225 DESGD--AYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPT 276
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 338 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRVM 517
SS +++ D DD D + KER R + KRR +K DS D+ +R
Sbjct: 56 SSDSEDDYDRDD--DEEREKRKEKERERRRRDKDRVKRRSERRKSSDSEDDVEEEDERDK 113
Query: 518 R 520
R
Sbjct: 114 R 114
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 314 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAE 442
+++IH + S +Q+ +DD+G++ S+L E + E H ++
Sbjct: 593 LEHIHSS-KSEDQSVYSDDDAGESGESSLHRIEAKEEEHISSD 634
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 347 NQNTEDEDDSGDNKASALSFKERRREAHTQAE 442
N + D DDSG + LS +E R++A+ + +
Sbjct: 128 NSDLSDSDDSGSKAETVLSSEENRQDANEKVK 159
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 320 NIHQTPSSSNQNTEDEDDSGDNKASAL-SFKER 415
N+H S S E+ED+S D A +L S KE+
Sbjct: 168 NLHIVESESESEEEEEDESVDKPAESLDSVKEK 200
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 353 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 460
N D D G K + +ER RE EQ DA
Sbjct: 20 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDA 55
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 353 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 460
N D D G K + +ER RE EQ DA
Sbjct: 93 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDA 128
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 302 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 460
SS +N+ Q+ S+S Q ++D +G N S E+RR+ + + R A
Sbjct: 330 SSRKNKNVDQSCSTSKQQSKDFPAAGSN-ISESQLDEQRRKNNEEVSHNNRSA 381
>At2g27690.1 68415.m03355 cytochrome P450, putative similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450; supported by
cDNA: gi_13877668
Length = 495
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -2
Query: 325 YVLNRSATATTRIHIGILIVIMKLNKIKHYINAIFH 218
++L RS T+T ++H+ ++ + ++H + FH
Sbjct: 58 HLLRRSPTSTIKVHVLNSVITANPSNVEHILKTNFH 93
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 308 GSIQNIHQTPSSSNQNTEDEDD 373
G + + ++ P+SSNQ ED+DD
Sbjct: 56 GGVNSQYRKPNSSNQALEDDDD 77
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 332 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPT 502
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ ++ T
Sbjct: 691 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 742
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 332 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPT 502
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ ++ T
Sbjct: 903 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 954
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 299 GSSGSIQNIHQTPSSSNQNTEDEDDSGDN 385
G+S S QN Q SSS Q +D+DD D+
Sbjct: 781 GTSNSTQN-GQMASSSQQPNDDDDDDDDD 808
>At1g42990.1 68414.m04949 bZIP transcription factor family protein
contains Pfam profile: PF00170: bZIP transcription
factor
Length = 295
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Frame = +2
Query: 341 SSNQNTEDEDDSGDNKASALSFKE--RRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQRV 514
S ++ +D+D+ GD+ A A + R R+A ++ +++++ ++ + L C R+
Sbjct: 123 SGSEIHDDDDEEGDDDAVAKKRRRRVRNRDAAVRSRERKKEYVQDLEKKSKYLERECLRL 182
Query: 515 MR-LATNQAKLQSFRNQLTTSSICYNSVVDREEERMHCVKMLSL 643
R L A+ QS R L + +++ ++E + ++ L L
Sbjct: 183 GRMLECFVAENQSLRYCLQKGNGNNTTMMSKQESAVLLLESLLL 226
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +2
Query: 332 TPSSSNQNTED----EDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYD 478
T SN N D + S D KAS S K + R A +KRR+ I +
Sbjct: 135 TVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLK 194
Query: 479 SLQDLVPTCQRV 514
+LQ+LVP +V
Sbjct: 195 TLQNLVPNGTKV 206
>At1g14687.1 68414.m01755 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 168
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 338 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 466
++ +N E+EDD+ + +RRR++ AEQ R+A+K
Sbjct: 82 TAEERNEEEEDDTEETSTEEKMTVQRRRKSKFTAEQ--REAMK 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,350
Number of Sequences: 28952
Number of extensions: 268101
Number of successful extensions: 1210
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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