Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0008
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 136 3e-33
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 132 3e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 29 0.36
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 26 3.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 7.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.8
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 7.8
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 136 bits (328), Expect = 3e-33
Identities = 68/100 (68%), Positives = 77/100 (77%)
Frame = +3
Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
ENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP
Sbjct: 72 ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPR 131
Query: 435 QDHQPITEASYVNIPVIALCNTDSP*DLWTLLSHATPSLP 554
D Q I EAS+VNIPVIALC+TDS +L+H ++P
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDS------ILNHVDVAIP 165
Score = 67.3 bits (157), Expect = 1e-12
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = +1
Query: 70 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEK
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEK 60
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 509 LRFVDIAIPCNTKSSHSIGL 568
L VD+AIP N K SIGL
Sbjct: 157 LNHVDVAIPINNKGYKSIGL 176
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 132 bits (319), Expect = 3e-32
Identities = 65/101 (64%), Positives = 77/101 (76%)
Frame = +3
Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
ENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP
Sbjct: 71 ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPR 130
Query: 435 QDHQPITEASYVNIPVIALCNTDSP*DLWTLLSHATPSLPT 557
D Q I EAS+VNIPVIALC+TDS +L+H ++PT
Sbjct: 131 ADAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165
Score = 67.3 bits (157), Expect = 1e-12
Identities = 25/55 (45%), Positives = 42/55 (76%)
Frame = +1
Query: 58 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEK
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +2
Query: 509 LRFVDIAIPCNTKSSHSIGL 568
L VDIAIP N K SIGL
Sbjct: 156 LNHVDIAIPTNNKGRKSIGL 175
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 29.5 bits (63), Expect = 0.36
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 405 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 506
P L+++L+P ++ EA ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 473 HSCDCFVQHRLPLRFVDIAIPCNT 544
HS D + Q+ +P R +++A C T
Sbjct: 176 HSKDDYAQYMIPFRDINVATSCRT 199
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 201 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 52
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 161 MSTNDVLMVPM*STCVVPGKNLFWLLVL 244
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 406 GSRNAAWIWLVKAPGVKRPAIGVAPVCAA 320
G+ +A W WL+ G A+ VA + +A
Sbjct: 92 GAPSAVWCWLIAGAGCMCIALSVAELVSA 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,948
Number of Sequences: 5004
Number of extensions: 54484
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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