Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0008
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               161   4e-40
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.66 
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   2.7  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   2.7  
SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   8.2  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                27   8.2  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  161 bits (391), Expect = 4e-40
 Identities = 73/85 (85%), Positives = 79/85 (92%)
 Frame = +3

Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
           ENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP 
Sbjct: 69  ENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPR 128

Query: 435 QDHQPITEASYVNIPVIALCNTDSP 509
            DHQP+TEASYVNIPVIA CNTDSP
Sbjct: 129 IDHQPVTEASYVNIPVIAFCNTDSP 153



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +1

Query: 52  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEK
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEK 57



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 506 PLRFVDIAIPCNTKSSHSIGL 568
           PLR VD+AIPCN K  HSIGL
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGL 173


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 497  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 333
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 497 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 339
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 497 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 339
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 287 TALRSACCTEVCXAHRCYAYCGTFHTRC 370
           + L  A CTE    HRC    G    RC
Sbjct: 18  SCLNGATCTETSYGHRCACVAGFSGNRC 45


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 162 CLQTTC*WYPCD-QLASYLGKTCSGCSC 242
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 421 TIKRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFS 311
           T+++RG ++A + W       +RP+     VC+ N S
Sbjct: 122 TMEKRGRKSATYFWPSSTSYERRPSFFADHVCSVNCS 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,399,601
Number of Sequences: 59808
Number of extensions: 454716
Number of successful extensions: 1050
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)