Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0008
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = +3

Query: 420 VLDPAQDHQPITEASYVNIPVIALCNTDSP*D 515
           ++DP ++++   E   + IP++   +   P D
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPPND 198


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 539 CMG*QCPQILGGVCVAQSNHRNV 471
           C+G  C  I GGV    S+ +N+
Sbjct: 10  CLGIACQNIRGGVVRENSSGKNL 32


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 398 ECSLDLVSKSTWCE 357
           E S+DLV  ST+CE
Sbjct: 260 ERSVDLVVTSTYCE 273


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 192 CDQLASYLGKTCSGCSCCRSHENPADVFVISSRPFGQRAV 311
           CD      G  CS  S   S     + FV  S+ F +R++
Sbjct: 7   CDLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSI 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,181
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)