Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0007
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 31 0.12
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 0.87
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 28 1.2
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 3.5
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 3.5
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 4.7
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 4.7
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 26 4.7
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 4.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 6.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 6.2
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.2
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 6.2
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 8.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 8.1
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 31.1 bits (67), Expect = 0.12
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 257 YVHYVGYDRRLDEWVS 304
YVHY Y++RLDEW++
Sbjct: 53 YVHYNDYNKRLDEWIT 68
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 553 EIDTWYFSPYP 585
EI+ WYFSPYP
Sbjct: 193 EIEPWYFSPYP 203
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 28.3 bits (60), Expect = 0.87
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 157 SKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLS 53
SKG T +E + ++S L N++ IG SNSLS
Sbjct: 413 SKGLQFTSNELTNPTAKYSQLPNNIANIGESNSLS 447
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = +2
Query: 221 VAIQYSGILLRNYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRK 400
V + G + +HY G+ DEWV + R++ + + N K K
Sbjct: 25 VDTEMKGDVTTYLIHYKGWKNSWDEWVEQDRILQWTEENLKTQKELKNAAISTRQKPTSK 84
Query: 401 ITRNQKRKHD 430
+ + KHD
Sbjct: 85 KSASSTSKHD 94
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 160 MSKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPF 47
MS GT + S+LR NSL IG S ++ PF
Sbjct: 381 MSLDIIGTSTILDKSLLRWDWYSNSLAAIGVSQTVFPF 418
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 VCEQSNNNINCDHL--LTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAAL 487
V +Q+ + IN + LTD + + KR+ DE++ + ++ PT L
Sbjct: 262 VLQQALHEINIEFRSRLTDSERKALEEEDKREKDELDGYMRPVSQATPTNTDL 314
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -3
Query: 163 PMSKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPFAIIMPTTTMVSRN 8
P+SK +G+ S S +S GF N LSP + + ++++S N
Sbjct: 238 PISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDLSPSQVTLNESSIISSN 289
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 402 IFRPDLSVSRWSQFMLLFDCSHTSNLSDITRWRDTHSSSLLSYPT 268
I R +++ + WS+ M CSH N + + + D+ + L + T
Sbjct: 389 IIRNEVAYAGWSEVMPFILCSHDENYAWLRKTDDSKAVQLANPKT 433
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +3
Query: 168 HYLVRRSDESWHPAEIIQSRYSTAESCYEIMSIMSDMIEDST 293
HY ++ E + E+ QS + + C+E + + +E T
Sbjct: 44 HYAIKELKEKTYNLELYQSLFEEFQDCFENEQLDVEWVESVT 85
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 4.7
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 299 VSRHRVMSD-RFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPT 475
+ R R+ SD FD+ E + +H L G ++R Q +K N +QK + + D
Sbjct: 354 LKRGRLTSDSNFDIEELEKDE---EHDLRRSLGVLLSRLQSKKLFISNEIQKQWHKKDDF 410
Query: 476 TAALEKXHEAI 508
T + HE I
Sbjct: 411 TEYEDIVHELI 421
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 6.2
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 374 LLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKXHEAILKLNT*TGIQIWKIW 553
LL DK ++R+ + K EI H + E P + LE +K IQ+ K+
Sbjct: 720 LLKDKY-TVVSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSRDELQIQVEKVE 778
Query: 554 KSIL-GILVRI 583
+ I G RI
Sbjct: 779 EKIFSGFCKRI 789
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 287 LDEWVSRHRVMSDRFDVCE 343
+ +W SR+ MSD+F++ E
Sbjct: 173 MGDWPSRYITMSDKFEIAE 191
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +3
Query: 105 CRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEIMSIMSDMIE 284
C+S + + P Q L I HY R ++SR+S + + I+ D
Sbjct: 537 CQSCNEITNTPEPIQDLSIPIHYPSSRVSRRHRFHRALRSRFSRSPKKSSV-KIVVDNAN 595
Query: 285 DSTNGCPAT 311
D T+ P T
Sbjct: 596 DDTDQAPTT 604
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 66 EKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDE 194
+K +N+E + +TD E +ES +Q + E Y SDE
Sbjct: 156 DKQTINSEYADDVSDNTDEERTESKGQQESNSAEEYDDDDSDE 198
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 505 YSKVKYIDRDTNL--ENMEIDTWYFSPYP 585
Y+ YI+ ++ L M+ TWY SPYP
Sbjct: 464 YTYACYINNNSYLPPSYMDFYTWYNSPYP 492
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 93 PNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEIMSIMS 272
PN S + ++E E PL + RRS S + S +S+ ++ S++S
Sbjct: 418 PNDPSSSLHSNNAEKAAEVPLRSSYYSGGRRSVTSMSDSPYRFSFFSSNQNETIHASVLS 477
Query: 273 DMIEDSTNG-----CPATGL 317
D+++D CP G+
Sbjct: 478 DLLDDGATSFRSLFCPEKGV 497
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 481 GGRWIHFGVSFL 446
G RW+HFGVS +
Sbjct: 18 GDRWLHFGVSHM 29
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 69 KPIVNNELPNPECRSTDNEDSESVPEQP 152
K +N E PN + T E SES EQP
Sbjct: 53 KEDINMEDPNVKTDETKVETSESTSEQP 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,368
Number of Sequences: 5004
Number of extensions: 50652
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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