Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0007
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 49 2e-06
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888... 32 0.39
02_01_0161 - 1123890-1124210,1124599-1124673,1124841-1124903,112... 29 2.1
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 29 3.6
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534... 28 6.3
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 6.3
02_02_0340 + 9135846-9138377 28 6.3
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905... 28 6.3
12_02_0223 + 15868889-15869182 27 8.3
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 27 8.3
03_02_0849 - 11768191-11771412 27 8.3
02_01_0758 + 5623953-5624171,5624251-5624430,5624533-5624591,562... 27 8.3
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +2
Query: 257 YVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDK-SGRKITRNQKRKHDE 433
YVHY ++RRLDEWV + + + + D + DK + K+TR+QKRK DE
Sbjct: 101 YVHYTEFNRRLDEWV--------KLEQLDLETVETDVDEKVEDKATSLKMTRHQKRKIDE 152
Query: 434 INHVQKTYAEMDPTTAALEKXHEAILKLNT*TGIQI 541
HV++ + E+D AA + HE K+ I++
Sbjct: 153 -THVEQGHEELD---AASLREHEEFTKVKNIAKIEL 184
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 505 YSKVKYIDRDTNLENMEIDTWYFSPYP 585
++KVK I + L EIDTWYFSP+P
Sbjct: 173 FTKVKNIAK-IELGRYEIDTWYFSPFP 198
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 150 PLDIGEHYLVRRSDESWHPAEIIQSRYSTAES 245
PL++G + R D+ HP ++I+ R S+ S
Sbjct: 62 PLEVGTRVMCRWRDQKLHPVKVIERRKSSTSS 93
>08_02_0907 -
22485714-22486859,22487836-22487882,22488456-22488830,
22489339-22489500,22490325-22490439
Length = 614
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 151 GCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPFAIIMPT-TTMVSRN 8
G S + + + V + GN I FSN+ SP A+ PT TM+S N
Sbjct: 291 GGSSSAAPLQIPVFQQQSTGNGNTVISFSNNASPMAMRAPTDNTMISFN 339
>02_01_0161 -
1123890-1124210,1124599-1124673,1124841-1124903,
1125020-1125358
Length = 265
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +3
Query: 3 AVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVR 182
A+LRD + ++ A+ + + + E+P+ CR E P P D+G +
Sbjct: 21 AILRD---LADLVRARHRRRRRRRVQREEIPSWGCRRPRTTPGEKKPAPPADVGRRHEAA 77
Query: 183 RSDES 197
S ++
Sbjct: 78 ASPDT 82
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 69 KPIVNNELPNPECRS-TDNEDSESVPEQPLDIGEHYLVRRSDESWHPA 209
K + N+E+PN E S +D + E D+G + ++E W PA
Sbjct: 214 KDLENHEIPNSETNSISDKQGDEEHQPAKKDVGIAWEDDENNEGWLPA 261
>09_06_0348 +
22452219-22452360,22452791-22452912,22453342-22453436,
22453691-22453844,22453952-22454014,22454329-22454478,
22454650-22454982,22455086-22455820
Length = 597
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 114 TDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEIM 260
T+ +D ES+ L+ E S E+ H + IQS ST E E+M
Sbjct: 194 TETKDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSTTERAEELM 242
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 141 PEQPLDIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEIMSIMSDMIEDSTNGC 302
P+ ++ E V SW+ A I+QSR +++ C I + T C
Sbjct: 1696 PDNFFEVEEFVFVALEFYSWYLATILQSRCGSSQECLSNSLISELSVATETMAC 1749
>02_02_0340 + 9135846-9138377
Length = 843
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 408 LVIFRPDLSVSRWSQFMLLFD-CSHTSNLSDITRWRDTHSSSLLSYPT*WT*FRNKI 241
L R D+S S ++D CSH SNL IT+ + SL PT T +NK+
Sbjct: 163 LTFNRVDMSKKIKSVIEGIYDLCSHVSNLLKITQPEERRVLSLKRPPTSSTITQNKL 219
>01_06_0159 +
27089006-27089064,27089925-27090007,27090414-27090588,
27091442-27091592,27091629-27091752,27092378-27092446,
27093197-27093291
Length = 251
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 260 VHYVGYDR-RLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKS 391
+H VG++ ++D W R ++D + NN+N + LL+ K+
Sbjct: 203 LHLVGWNNVKIDVWTHSVRGLTDNDFILAAKINNLNLEGLLSKKA 247
>12_02_0223 + 15868889-15869182
Length = 97
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 223 DCIISAGCHDSSDRRTK*CSPMSKGCSGTDSESSLSVLRHSGL 95
D I +A C +S D K C+P GCS +S L L+ L
Sbjct: 44 DDICNASCVNS-DTIAKLCAPQCDGCSPEACQSCLQALKQECL 85
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 296 WVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAE 463
W++R R + + E++NN N D KS +K Q + DE+ +Q+ YA+
Sbjct: 189 WMNRKRTVLAG-EHKEENNNTANLDQSSEAKSDKK----QLSEEDEMKSIQEAYAK 239
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 457 VSFLHMVYFVMFTFLIPCYFPAG--FVREQVVAVYVIVRLL 341
+S+ H+ Y + F + C FP G F +++V+ +++ L+
Sbjct: 418 ISYHHLPYHLKQLFTLCCLFPVGHEFEKDEVIRLWIAEGLI 458
>02_01_0758 +
5623953-5624171,5624251-5624430,5624533-5624591,
5625243-5625390,5625476-5625547,5625636-5625746,
5626615-5626882,5627222-5627265,5627393-5627477,
5627554-5627600
Length = 410
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 51 GDKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDES 197
GD +++ + P + T EDS+ + +G++ V++ DES
Sbjct: 126 GDSSVDRNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDES 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,374
Number of Sequences: 37544
Number of extensions: 321612
Number of successful extensions: 946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -