Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0007
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21) 96 2e-20
SB_40014| Best HMM Match : Chromo (HMM E-Value=0.73) 33 0.13
SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0) 33 0.13
SB_21821| Best HMM Match : MRG (HMM E-Value=0) 31 0.52
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 31 0.69
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095) 30 1.6
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) 28 4.9
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014) 28 4.9
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012) 28 6.4
SB_33500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2) 28 6.4
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_24737| Best HMM Match : KID (HMM E-Value=0.096) 27 8.5
SB_6456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)
Length = 570
Score = 96.3 bits (229), Expect = 2e-20
Identities = 51/78 (65%), Positives = 55/78 (70%)
Frame = +2
Query: 284 RLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAE 463
RLDEWV RV D+ + + I D L D RKITRNQKRKHDEINHVQKTYAE
Sbjct: 57 RLDEWVEAARV-----DLQQNDDKPIIDDKLDVDGPERKITRNQKRKHDEINHVQKTYAE 111
Query: 464 MDPTTAALEKXHEAILKL 517
MDPTTAALEK HEAI K+
Sbjct: 112 MDPTTAALEKEHEAITKI 129
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 508 SKVKYIDRDTNLENMEIDTWYFSPYP 585
+K+K+ID+ EIDTWYFSPYP
Sbjct: 127 TKIKFIDK-AQFGKYEIDTWYFSPYP 151
>SB_40014| Best HMM Match : Chromo (HMM E-Value=0.73)
Length = 153
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 257 YVHYVGYDRRLDEWVSRHRVMSDRFDV 337
YVH++ +++RLDEWV+ R+ R +
Sbjct: 72 YVHFIDFNKRLDEWVTEDRLDKTRIQL 98
>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
Length = 475
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 257 YVHYVGYDRRLDEWVSRHRVMSDRFDV 337
YVH++ +++RLDEWV+ R+ R +
Sbjct: 72 YVHFIDFNKRLDEWVTEDRLDKTRIQL 98
>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
Length = 292
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 251 RNYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRK 424
R +HY G+++ DEWV RV+ D Q + +L + K+ +K ++ K
Sbjct: 37 RYLIHYNGWNKNWDEWVPESRVLKYN-DANLQKQRELREQNLKSKKARKKQEKSDSEK 93
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 260 VHYVGYDRRLDEWVSRHRVM 319
+HY G++ R DEW+S RV+
Sbjct: 500 IHYAGWNNRYDEWISPDRVV 519
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 529 RDTNLENMEIDTWYFSPYP 585
R L + EIDTWY SPYP
Sbjct: 451 RCIELGSYEIDTWYSSPYP 469
>SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)
Length = 486
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 78 VNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDES 197
++ EL P+ R D ED + V E+PLD+ E + + D S
Sbjct: 442 IHGELNEPDVRRDDAEDEDEV-EEPLDLREDHERKGRDTS 480
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 221 VAIQYSGILLRNYVHYV-GYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHL--LTDKS 391
V + Y G RN VH + GYD DE+ + + SD+ + + D L +TD S
Sbjct: 221 VFVFYPGEGYRN-VHVIRGYDTAADEYPNHLNLFSDKGGMIAVQEAKLFPDSLKPVTDLS 279
Query: 392 GRKITRNQKRKHD 430
G R +R+H+
Sbjct: 280 GHGGERLAERRHN 292
>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
Length = 1643
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 33 GIIMAKGDKELEKPIV-NNELPNPECRSTDNEDSESVPEQPLDIGE 167
G K D E++ P+ NN+L +S+ + E E+P +I E
Sbjct: 349 GTANPKADVEMDAPVESNNDLKQDVAQSSKTSEDECKSEEPFEIKE 394
>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
Length = 351
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 54 DKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYL 176
D+ KP+V + P ++ + D + P D+ EHYL
Sbjct: 124 DEPPPKPLVKEKSKKPRAKNKEVFDLWGKEDTPKDVNEHYL 164
>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
Length = 882
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 460 GVSFLHMVYFVMFTFLIPCYFPAGFVREQVVAVYVIVRLLAYVEPI*HN 314
G H++ F F F P Y+PA VR Q V+ R Y + + HN
Sbjct: 9 GERISHLLRFYYFYFGFPVYYPACIVRLQHFFRIVLQRSTDY-DKVIHN 56
>SB_33500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 221 VAIQYSGILLRNYVHYV-GYDRRLDEWVSRHRVMSD 325
V + Y G RN VH + GYD DE+ S H + SD
Sbjct: 336 VFVFYPGEGYRN-VHVICGYDTAADEYPSHHNLFSD 370
>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
Length = 186
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 45 AKGDKELEKPIVNNELPNPECRSTDNEDSESVPEQPL 155
AK +KE EK N E+P E + + E ++S P + L
Sbjct: 143 AKKEKEPEKDKTNMEVPPKEKATLNTEKTDSTPVETL 179
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 3 AVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECRSTDNE 125
A + DT V+ GI A+ ++L KP+ LP+P C + N+
Sbjct: 904 AHVSDTPVLCGINQARVMRQLTKPVECGNLPSP-CYAAINQ 943
>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
Length = 636
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 392 GRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKXHEAILK 514
G K+T++++ K DE+ V +T E+ EK + + K
Sbjct: 119 GEKLTKSEQEKSDELGKVWETMTELQSVIEDREKSIDKLEK 159
>SB_6456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 243 SCYEIMSIMSDMIEDSTNGC 302
S Y +MSI+SD ED N C
Sbjct: 18 SYYHVMSIVSDSAEDIVNSC 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,682
Number of Sequences: 59808
Number of extensions: 378395
Number of successful extensions: 1383
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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