Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0007
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.18 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +2

Query: 227 IQYSGILLRNYVHYVGYDRRLDEWVS---RHRVMSDRFDVCE----QSNNNINCDHLLTD 385
           +  S   + N++  +GY ++LD WV    + + ++ R + C+    ++ N+     L+T 
Sbjct: 93  LHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQRINSCDLLKKRNENDPFLKRLITG 152

Query: 386 KSGRKITRNQKRK 424
                +  N KRK
Sbjct: 153 DEKWVVYNNIKRK 165


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 502 SYSKVKYIDRDTNLENMEID 561
           SY+ VKY D  T++  M++D
Sbjct: 110 SYNDVKYCDGLTSVYRMQVD 129


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 368 RSLCYCSTARIRRTY 324
           R LC C   R+RR Y
Sbjct: 403 RILCACCPGRVRRRY 417


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 520 YIDRDTNLENMEIDT 564
           YID++T   N+EI T
Sbjct: 460 YIDKETKDMNLEIST 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,933
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)