Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0004
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      70   1e-14
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          69   4e-14
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.87 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.87 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.0  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   2.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 70.1 bits (164), Expect = 1e-14
 Identities = 37/93 (39%), Positives = 53/93 (56%)
 Frame = +3

Query: 219 NFLFKMESSQDELVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADV 398
           +F  +  + Q  +    E L   E +VD TL  D + + KAHRVVL+A SPYF+ +L   
Sbjct: 6   HFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGR-SLKAHRVVLSACSPYFRELLKST 64

Query: 399 PMDHCSILFPGVKDFEMRALLEYMYTGEVNVTQ 497
           P  H  I+   V   ++ AL+E++Y GEVNV Q
Sbjct: 65  PCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQ 97



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 217 QTFCLKWNHHKTN 255
           Q FCL+WN+++++
Sbjct: 5   QHFCLRWNNYQSS 17


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 68.5 bits (160), Expect = 4e-14
 Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +3

Query: 219 NFLFKMESSQDELVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADV 398
           ++  +  + Q  +  +   L++ E +VD TL  ++  + KAH+VVL+A S YFQ +L   
Sbjct: 10  HYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNE-ASLKAHKVVLSACSSYFQKLLLSN 68

Query: 399 PMDHCSILFPGVKDF-EMRALLEYMYTGEVNVTQAHIPE**KSLNNLK 539
           P  H +I+ P    F +++ ++E++Y GE++V+QA +    K+ + LK
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLK 116



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 217 QTFCLKWNHHKTN 255
           Q +CL+WN++++N
Sbjct: 9   QHYCLRWNNYQSN 21


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 535 KLFSDFHYSGIWACVTLTSPVYIYSRSALI 446
           K F  F+ + +WA   +   +Y+Y+ S  +
Sbjct: 117 KTFDVFYNTAVWARFNVNEQMYLYALSVAV 146


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 535 KLFSDFHYSGIWACVTLTSPVYIYSRSALI 446
           K F  F+ + +WA   +   +Y+Y+ S  +
Sbjct: 117 KTFDVFYNTAVWARFNVNEQMYLYALSVAV 146


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 372 YFQSILADVPMDHCSILFPGVKDF 443
           +F  +++ +P+D+  ++F   +DF
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDF 192


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 372 YFQSILADVPMDHCSILFPGVKDF 443
           +F  +++ +P+D+  ++F   +DF
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDF 192


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 372 YFQSILADVPMDHCSILFPGVKDF 443
           +F  +++ +P+D+  ++F   +DF
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDF 192


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 217 QTFCLKWNHHKTN 255
           Q FCL+WN+++++
Sbjct: 5   QHFCLRWNNYQSS 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,455
Number of Sequences: 438
Number of extensions: 3492
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)