Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0002
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      50   6e-07
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     27   6.6  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 22/34 (64%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
 Frame = +3

Query: 333 WTIGLINSRY-RYLTAETFGFKINANGTSLKKKQ 431
           W IGL+N    +YLTAETFGFK+N++G SL+KKQ
Sbjct: 247 WNIGLMNDNSSKYLTAETFGFKLNSDGVSLRKKQ 280


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 309  TQNQQKGWWTIGLINSRY 362
            T N +KGWW +GL +  Y
Sbjct: 1964 TINLRKGWWEVGLTSVNY 1981


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 388 PKVSAVR*RYREFIRPMVHHPFCWFWVRMSPALLM-SPLLC 269
           PK+S    R   F +P  HH    FW+ +  A L   P LC
Sbjct: 775 PKMSTFNLRLNGFKKPAYHHYMRPFWLALEEAELRDEPGLC 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,732,934
Number of Sequences: 59808
Number of extensions: 207001
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)