Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0002
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   4.1  
At5g50770.1 68418.m06290 short-chain dehydrogenase/reductase (SD...    27   7.2  

>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 300 DILTQNQQKGWWTIGLINSRYRYLTAETF--GFKINANGTSLKKK 428
           +IL++  Q+ +W    +   YRY+TA+ F  GFKI+  G +++ +
Sbjct: 429 EILSKKDQEQYWANPEL--PYRYVTAKKFEEGFKIHHFGRAMRSQ 471


>At5g50770.1 68418.m06290 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 342

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 169 IFVVSAFCGFLAISRLHFFC 228
           I V+++ CG++A  RL F+C
Sbjct: 179 IVVIASGCGYIASPRLSFYC 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,287,853
Number of Sequences: 28952
Number of extensions: 146442
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)