Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0001
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305     29   2.8  
05_06_0118 + 25735966-25737601,25737698-25738488                       29   3.6  
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438...    28   6.4  
09_03_0214 - 13517895-13518012,13519008-13519052,13519611-135196...    28   8.4  
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077...    28   8.4  
04_04_0977 + 29851086-29851463,29852054-29852551,29853665-298537...    28   8.4  

>01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305
          Length = 681

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 615 NRFKMTASAARKKKII--LSRQVERGEEATLRAVCIHSMITEDLCSTKTSPQRFNIRHL 445
           +RF+MT +  +  K+   + RQ  R E+ T + + ++ M  E     K    RFN+ HL
Sbjct: 614 SRFEMTYNVQKTWKVTDPVIRQKLR-EKITQKVIPLYRMYLESYSDKKQKSARFNVEHL 671


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/92 (28%), Positives = 38/92 (41%)
 Frame = +2

Query: 413 GIDTNVPRRYNKCRILNRCGEVLVLHKSSVIIL*IQTARNVASSPLSTCLERMIFFFRAA 592
           G+  N+PR   + RI+   G       S  II+     +  A  P+S  LE ++      
Sbjct: 340 GLTGNLPRDLLEPRIVKVIGSFGSYRSSKKIIIATSKHKVCAYDPVSRTLETIVSIMVTC 399

Query: 593 EAVILNLFGV*VIVFSNSLRSATPLHRRRWSI 688
            A          I FS+  +S TP+HR R  I
Sbjct: 400 SAYQNEKSD---IRFSSFTKSFTPVHRTRKEI 428


>06_03_1298 +
           29141578-29141623,29142129-29142250,29143818-29143874,
           29143983-29144138,29144220-29144304,29144575-29144665,
           29144807-29144971,29145064-29145186,29145334-29145409,
           29145513-29145642,29145951-29147824,29148339-29148529,
           29148697-29148860,29149164-29149275,29149276-29149294
          Length = 1136

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 513 HSMITEDLCSTKTSPQRFNIRHLL 442
           HS++TE++ S  TSP   N  HLL
Sbjct: 720 HSVLTEEIPSCSTSPSTANGNHLL 743


>09_03_0214 -
           13517895-13518012,13519008-13519052,13519611-13519687,
           13520536-13520668,13522210-13522322
          Length = 161

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 228 IAAASYKIIIKVKRLEINNKLLSYTLKNRSRAPSRGTVP 112
           I+   Y I + +KR+ INN LL Y   +  R+ +   +P
Sbjct: 78  ISVGMYAIRLHLKRITINNSLLLYAGSSAIRSSNHRGIP 116


>07_03_1699 -
           28807154-28807218,28807324-28807466,28807570-28807715,
           28808142-28808242,28808314-28808365,28808483-28808538,
           28808616-28808721,28809314-28809358
          Length = 237

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 32  DAILRRAVVSVKLAFRTLFISYCL 103
           +AILRR ++ V L F+ L+ +YC+
Sbjct: 209 EAILRRYIMLVDLRFQGLYATYCV 232


>04_04_0977 +
           29851086-29851463,29852054-29852551,29853665-29853754,
           29854369-29854491
          Length = 362

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -3

Query: 168 LLSYTLKNRSRAPSRGTVPSADRQYEINNVLKANFTETTARRRIASGRLPRANKYL 1
           +L Y   N S A +   VP A   +  NN   A  TET  R ++A+G +P  ++ L
Sbjct: 13  VLIYDTFNASAAAAAAVVPPASFLFGNNNAGGAAGTET--RVQVAAGAVPEVDQLL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,002,018
Number of Sequences: 37544
Number of extensions: 359567
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)