Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0001
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57156| Best HMM Match : DUF1456 (HMM E-Value=4.9)                   29   4.9  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   4.9  

>SB_57156| Best HMM Match : DUF1456 (HMM E-Value=4.9)
          Length = 501

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 343 PSTVLQD*DC*LFGSESASLCIKTSHVPATRPRPYAV 233
           P +   D D   F + S+S C+ T+H P T PR Y +
Sbjct: 215 PFSGKSDSDTSHFMAPSSSACLDTNHNPLTPPRSYGL 251


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = -1

Query: 470  HSDLIFGIYYSGGEHSYQFLLSHQFFFKCCQAELSR*RTS-TDSVHSSTGLRLLIVWVRI 294
            H+  +   + +G  +SY+     ++  K  +   S   TS T +  SST     +  V  
Sbjct: 1283 HNGWVEVSWNNGTSNSYRMGADGKYDLKVIEPNPSTTPTSSTPTSSSSTSTPTTLNTVTS 1342

Query: 293  SLIVYQNEPRPSDQASSVCGVASQQLATK 207
            SL++ Q  P  +DQ +S    +SQ+++ +
Sbjct: 1343 SLLMMQERPSTADQGASSDSGSSQEVSPR 1371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,398,903
Number of Sequences: 59808
Number of extensions: 401804
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)