Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0960
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    31   0.20 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    28   1.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   4.4  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   5.8  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   5.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.6  

>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 379 ESNTSPGDYVLSVLHQGQVVHYQIRRHGEDAFFSIEEHTTVHGWI--LLYNITVVIQMDL 552
           E    P  +++SV HQ     +Q + H  D F  +     V+GW+   LY + V+I   L
Sbjct: 17  EDAVGPCPFLISVYHQ-----FQTKNHVLDIFEDVIPSIQVYGWLTMTLYELGVLIADQL 71

Query: 553 LL 558
           LL
Sbjct: 72  LL 73


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = +2

Query: 602 EDTGNNKFTAQSNGSGSFQRGVEVTGQAGYRSRDAKKPGXSEPRCTSPRGXDETPSSPNS 781
           + T N+    + + S S Q   +   Q     ++ ++P  SEP    P    +TP +P +
Sbjct: 471 KSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRN 530

Query: 782 IEXRLHCQRSETPLGYNXP 838
           I        ++ P+    P
Sbjct: 531 IMPLPGLMSADQPIKVTEP 549


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 402 LCFVCFASGSSSALSNTQTR*RCILLYRRAHNCSW 506
           LC+ C    S S+L +  T    ++ YRRA  C W
Sbjct: 378 LCYTCLLVDSESSLYDRMTM---LVAYRRAIRCIW 409


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 236  TSWLLS*YPNSKTQILYFQVLIKIXINDIFYVFYNSTFLQ 117
            T++LLS    +   +L FQ++ K  I D +  F    ++Q
Sbjct: 1130 TTYLLSPVDFANNPLLLFQIISKYKIKDTYATFQTLNYIQ 1169


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 256 NSFLLRMNREDNVNWFH 306
           NS + R+N+++ V WFH
Sbjct: 409 NSDIQRLNKDEEVTWFH 425


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 331 EKLLKEEGEDGVFLVRESNTSPGDYVLSVLHQGQVVHYQIR 453
           EK+ +E   DG F   + N  P +YVL    + Q++  Q R
Sbjct: 612 EKIARENEMDGNFKTMKINQHPDEYVLRTPKKIQLLEGQKR 652


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 620 KFTAQSNGSGSFQRGVEVTGQAGYRSRDAKKPGXSEPRCTSPRGXDETPSSPN 778
           K  +Q    GS       T      ++D  KP  S+P  + P    + P+ P+
Sbjct: 64  KHASQLRAGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPALPS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,432
Number of Sequences: 5004
Number of extensions: 68177
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)