BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0960 (841 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil... 31 0.20 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1 SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 28 1.9 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 4.4 SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 26 5.8 SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 5.8 SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.6 >SPCC126.13c |||histone deacetylase complex subunit, SAP128 family |Schizosaccharomyces pombe|chr 3|||Manual Length = 145 Score = 31.1 bits (67), Expect = 0.20 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 379 ESNTSPGDYVLSVLHQGQVVHYQIRRHGEDAFFSIEEHTTVHGWI--LLYNITVVIQMDL 552 E P +++SV HQ +Q + H D F + V+GW+ LY + V+I L Sbjct: 17 EDAVGPCPFLISVYHQ-----FQTKNHVLDIFEDVIPSIQVYGWLTMTLYELGVLIADQL 71 Query: 553 LL 558 LL Sbjct: 72 LL 73 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 28.7 bits (61), Expect = 1.1 Identities = 17/79 (21%), Positives = 32/79 (40%) Frame = +2 Query: 602 EDTGNNKFTAQSNGSGSFQRGVEVTGQAGYRSRDAKKPGXSEPRCTSPRGXDETPSSPNS 781 + T N+ + + S S Q + Q ++ ++P SEP P +TP +P + Sbjct: 471 KSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRN 530 Query: 782 IEXRLHCQRSETPLGYNXP 838 I ++ P+ P Sbjct: 531 IMPLPGLMSADQPIKVTEP 549 >SPBC1718.02 |hop1||linear element associated protein Hop1|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 27.9 bits (59), Expect = 1.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 402 LCFVCFASGSSSALSNTQTR*RCILLYRRAHNCSW 506 LC+ C S S+L + T ++ YRRA C W Sbjct: 378 LCYTCLLVDSESSLYDRMTM---LVAYRRAIRCIW 409 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 26.6 bits (56), Expect = 4.4 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 236 TSWLLS*YPNSKTQILYFQVLIKIXINDIFYVFYNSTFLQ 117 T++LLS + +L FQ++ K I D + F ++Q Sbjct: 1130 TTYLLSPVDFANNPLLLFQIISKYKIKDTYATFQTLNYIQ 1169 >SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 26.2 bits (55), Expect = 5.8 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +1 Query: 256 NSFLLRMNREDNVNWFH 306 NS + R+N+++ V WFH Sbjct: 409 NSDIQRLNKDEEVTWFH 425 >SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosaccharomyces pombe|chr 1|||Manual Length = 722 Score = 26.2 bits (55), Expect = 5.8 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 331 EKLLKEEGEDGVFLVRESNTSPGDYVLSVLHQGQVVHYQIR 453 EK+ +E DG F + N P +YVL + Q++ Q R Sbjct: 612 EKIARENEMDGNFKTMKINQHPDEYVLRTPKKIQLLEGQKR 652 >SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 25.8 bits (54), Expect = 7.6 Identities = 13/53 (24%), Positives = 21/53 (39%) Frame = +2 Query: 620 KFTAQSNGSGSFQRGVEVTGQAGYRSRDAKKPGXSEPRCTSPRGXDETPSSPN 778 K +Q GS T ++D KP S+P + P + P+ P+ Sbjct: 64 KHASQLRAGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPALPS 116 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,324,432 Number of Sequences: 5004 Number of extensions: 68177 Number of successful extensions: 170 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 170 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 414453330 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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