Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0960
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915...    33   0.37 
11_04_0103 - 13500283-13500314,13500383-13500895,13500980-13501160     31   0.86 
05_03_0371 + 13175939-13176688,13177367-13178629                       29   4.6  
11_01_0528 - 4148737-4149483,4149618-4150147,4150238-4150736,415...    28   8.1  

>07_03_0699 +
           20772415-20773450,20789050-20789606,20790971-20791567,
           20792258-20792413
          Length = 781

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +3

Query: 540 SNGLVTRLSIVCKGEPPPHESRTQGTTNLLHRATEAGHFNVVSKLLGKRATGVATPRNQD 719
           S+G     +++C+  P    +R +     LH A++AGH +V + LL  R    ATPR+++
Sbjct: 430 SHGHAELAALICERAPSLAATRNRSLGTPLHCASKAGHRDVAACLL--RVMDQATPRSRN 487


>11_04_0103 - 13500283-13500314,13500383-13500895,13500980-13501160
          Length = 241

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 691 PESRRQETRTVRTAVHIAARAGRDXILAEL 780
           P S R+ T  +RT +HIAA  G D ++AEL
Sbjct: 66  PCSIREVTAELRTLLHIAAGQGHDDLIAEL 95


>05_03_0371 + 13175939-13176688,13177367-13178629
          Length = 670

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 730 AVHIAARAGRDXILAELHRXAAPLSTFRDSFG 825
           A+H AAR G   +L EL +  +  S FRD+ G
Sbjct: 205 AMHAAARGGNLEVLRELLQGCSDASAFRDAQG 236


>11_01_0528 -
           4148737-4149483,4149618-4150147,4150238-4150736,
           4152041-4152043
          Length = 592

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 534 SDSNGLVTRLSIVCKGEPPPHESRTQGTTNLLHRATEAGHFNVVSKLLGKRATGV 698
           SD N  + R +I+    P     +     + LH A + GH +VV +L+G R   V
Sbjct: 197 SDGNSKIIR-AIMATAPPGTVYMKDSDGLSALHVAAKLGHADVVKQLIGIRPDAV 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,675,040
Number of Sequences: 37544
Number of extensions: 446465
Number of successful extensions: 1180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)