Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0958
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355...    29   4.7  
12_02_0674 - 21745321-21746223,21746229-21747608                       29   6.2  
06_01_0887 + 6803937-6804030,6804101-6804204                           29   6.2  
06_02_0155 + 12380452-12381012                                         28   8.2  
01_06_1063 + 34194853-34195671                                         28   8.2  

>06_01_0497 +
           3555919-3557154,3557815-3558143,3558177-3558775,
           3558919-3560393
          Length = 1212

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +1

Query: 409 SYALRSPSKWSR---NNKRTTCTSSSPYTDGWFYVTHPRPTAS----AGLLAEYGSRRDE 567
           S  +  PS+WS    +  R+ C S++  T G    T P P AS    AGLL  + SRR E
Sbjct: 500 SMRMSPPSRWSMCTVHAARSWCRSAA--TRGARRGTSPLPPASGGGGAGLLLSWRSRRRE 557

Query: 568 HEGRR 582
            E  R
Sbjct: 558 EETAR 562


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 391 ACKRSTSYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTHPRPTASA 531
           ACK STS +  +P+ +S  N  T  TS+ P T         RP ASA
Sbjct: 706 ACKFSTSTSTFTPTSFS--NDLTASTSTFPTTTRLIPTATSRPIASA 750


>06_01_0887 + 6803937-6804030,6804101-6804204
          Length = 65

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 15 LLCSGNKQLSSAKSNVKFC 71
          L+CSG K+L+S+  N KFC
Sbjct: 27 LMCSGYKELASSLRNKKFC 45


>06_02_0155 + 12380452-12381012
          Length = 186

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 383 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHT 484
           GP+   G H+     H  GA    G  APPA  T
Sbjct: 28  GPNDGDGGHKPSPPPHAGGAVNGNGGAAPPAPAT 61


>01_06_1063 + 34194853-34195671
          Length = 272

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +2

Query: 410 RTPLEAHQNGAETTRGQPAPPAHHTPTVGFTL 505
           RTPL     GA TT  Q  PP+ HTP    TL
Sbjct: 11  RTPL----GGAATTPDQLPPPSPHTPRPAITL 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,289
Number of Sequences: 37544
Number of extensions: 410657
Number of successful extensions: 1290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)