BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0958 (852 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 29 4.7 12_02_0674 - 21745321-21746223,21746229-21747608 29 6.2 06_01_0887 + 6803937-6804030,6804101-6804204 29 6.2 06_02_0155 + 12380452-12381012 28 8.2 01_06_1063 + 34194853-34195671 28 8.2 >06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775, 3558919-3560393 Length = 1212 Score = 29.1 bits (62), Expect = 4.7 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Frame = +1 Query: 409 SYALRSPSKWSR---NNKRTTCTSSSPYTDGWFYVTHPRPTAS----AGLLAEYGSRRDE 567 S + PS+WS + R+ C S++ T G T P P AS AGLL + SRR E Sbjct: 500 SMRMSPPSRWSMCTVHAARSWCRSAA--TRGARRGTSPLPPASGGGGAGLLLSWRSRRRE 557 Query: 568 HEGRR 582 E R Sbjct: 558 EETAR 562 >12_02_0674 - 21745321-21746223,21746229-21747608 Length = 760 Score = 28.7 bits (61), Expect = 6.2 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = +1 Query: 391 ACKRSTSYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTHPRPTASA 531 ACK STS + +P+ +S N T TS+ P T RP ASA Sbjct: 706 ACKFSTSTSTFTPTSFS--NDLTASTSTFPTTTRLIPTATSRPIASA 750 >06_01_0887 + 6803937-6804030,6804101-6804204 Length = 65 Score = 28.7 bits (61), Expect = 6.2 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 15 LLCSGNKQLSSAKSNVKFC 71 L+CSG K+L+S+ N KFC Sbjct: 27 LMCSGYKELASSLRNKKFC 45 >06_02_0155 + 12380452-12381012 Length = 186 Score = 28.3 bits (60), Expect = 8.2 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +2 Query: 383 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHT 484 GP+ G H+ H GA G APPA T Sbjct: 28 GPNDGDGGHKPSPPPHAGGAVNGNGGAAPPAPAT 61 >01_06_1063 + 34194853-34195671 Length = 272 Score = 28.3 bits (60), Expect = 8.2 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +2 Query: 410 RTPLEAHQNGAETTRGQPAPPAHHTPTVGFTL 505 RTPL GA TT Q PP+ HTP TL Sbjct: 11 RTPL----GGAATTPDQLPPPSPHTPRPAITL 38 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,632,289 Number of Sequences: 37544 Number of extensions: 410657 Number of successful extensions: 1290 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1289 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2373961368 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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