Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0958
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 31   1.6  
SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_29828| Best HMM Match : IGFBP (HMM E-Value=6.8)                     29   6.3  
SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)                   28   8.4  

>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +2

Query: 242 PHAV-AMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGXQEGRGPSHAKGAHRTP 418
           PH+  A+LH+FSE +CRGC NYEGA+RIE ++  +R L++     E R   H  G     
Sbjct: 16  PHSPWAILHDFSEPICRGCCNYEGAERIEDIIHYSRLLRKNWEKSE-RNAQH--GVKNDR 72

Query: 419 LEAHQNGAETTRGQPAPP 472
           L +  +   +T   P+PP
Sbjct: 73  LNSTGSSVSST---PSPP 87



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 210 KRQHCYLCDLPRMPWQCCMSFQKQCVEG 293
           +RQHC+LCDLP  PW     F +    G
Sbjct: 6   QRQHCFLCDLPHSPWAILHDFSEPICRG 33


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 123  KSVTIFKRNEEN--RSLALRTTPGGEMSVMQKRQHCYLCDLPRMPWQCCMSFQKQ 281
            +  T+ +R EEN  R   LR+T   E S+ +     Y   +PR  W+  + F KQ
Sbjct: 1351 RKTTLLRRREENMDRMRHLRSTRQ-EQSLTRPYTFTYYVQVPRQVWELPLGFNKQ 1404


>SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 392 HAKGAHRTPLE-AHQNGAE--TTRGQPAPPAHHTPT 490
           H + AHRT  +  H   A   TT+ QP  PAH T T
Sbjct: 35  HTEPAHRTSTQNQHTEPAHRTTTQNQPTEPAHRTTT 70


>SB_29828| Best HMM Match : IGFBP (HMM E-Value=6.8)
          Length = 159

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
 Frame = +2

Query: 230 LRLAPHAVAMLHEFSEAVCRGCVN--YEGADRIEVVLETARQLKRAHGXQEGRGPSHAKG 403
           L+L P  V   H+     CR  V    E    I+ +L      KR    +EG G      
Sbjct: 29  LKLNPGYVFWYHQAYHITCRCSVGKPVECHPSIKCILCRGDTSKRCDHGEEGNGDKLLIR 88

Query: 404 AHRTPLEAHQNGAETTRGQPAPPAHH 481
            HR+      N      GQP PPA H
Sbjct: 89  DHRS-----SNPHPPLPGQPQPPAPH 109


>SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)
          Length = 313

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 341 ARQLKRAHGXQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 487
           AR +++A+  +E  GP H +G  R+        +  T+ +      HTP
Sbjct: 216 ARSIRQAYADREHEGPIHTQGLRRSRTRKSDPYSRLTQIENTQDPIHTP 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,292,346
Number of Sequences: 59808
Number of extensions: 449933
Number of successful extensions: 1319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)