Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0958
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi...    29   3.0  
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa...    29   5.2  
At1g61030.1 68414.m06871 expressed protein                             29   5.2  
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    28   6.9  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    28   6.9  

>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 AHRTPLEAHQNGAETTRGQPAPPAHHT 484
           AHRTP +  +   ET    P+PP+H T
Sbjct: 56  AHRTPFDLRKWDPETHLPPPSPPSHST 82


>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
           family protein 
          Length = 630

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 96  DSVFSRRHNKSVTIFKRNEENRSLALRTTPGGEMSVMQKRQHCYLC--DLPRMPWQC 260
           D +   R  +++     +  N  LA+  + G ++SV+    H  +   DLP  PW C
Sbjct: 326 DDILLPRTTRAIKDLHLSPHNNGLAVFGSLGKKLSVISLESHNTVLSYDLPAAPWSC 382


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 123 KSVTIFKRNEENRSLALRTTP--GGEMSVMQKRQHCYL 230
           KS+++ KRN+    +   TTP  G + SVM    HC L
Sbjct: 440 KSLSVSKRNQSAFLVGCSTTPKPGSQSSVMSTIDHCTL 477


>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 488 TVGFTLHIHDLRLVQAFWLNMEAEETNM-RVDD*PIYLHIIFRHMQG 625
           T+ F +H H++ LVQ  W  + A E  M R+ +  +  H +     G
Sbjct: 159 TIPFLIHNHEISLVQCRWKFVNANECLMTRMQEMSLNYHFVAEQESG 205


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 488 TVGFTLHIHDLRLVQAFWLNMEAEETNM-RVDD*PIYLHIIFRHMQG 625
           T+ F +H H++ LVQ  W  + A E  M R+ +  +  H +     G
Sbjct: 231 TIPFLIHNHEISLVQCRWKFVNANECLMTRMQEMSLNYHFVAEQESG 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,875
Number of Sequences: 28952
Number of extensions: 303154
Number of successful extensions: 947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)