Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0955
         (846 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.7  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   3.0  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   5.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 264 YESEPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTY 148
           + S  GG SA++ + +  +LS+       L PS  PP++
Sbjct: 88  FSSIGGGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSH 126


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
           + F  F   + A D C+  N T++L   LK++I
Sbjct: 202 YVFDLFYLSKRASDLCNEANKTKILLVGLKIDI 234


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 695 EVEFLDSVISXQNHPEYISXTNPRINXPFH 784
           ++EF D  ++ QNHP  ++        P H
Sbjct: 41  DLEFWDLDLNAQNHPRGLTIIQNGYGLPGH 70


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +2

Query: 734 HPEYISXTNPRINXP---FHPSTPMG 802
           +PEYIS  NP    P      +TP+G
Sbjct: 376 NPEYISVVNPESPYPQIGSERATPVG 401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,479
Number of Sequences: 336
Number of extensions: 2684
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)