Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0955
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 6e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.039
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.36
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.47
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.47
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.47
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.83
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 1.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.4
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 1.9
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 27 2.5
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 2.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 5.8
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 7.7
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 7.7
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 7.7
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +1
Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
+KSP FAFI FEN A++A +++NG+ G TLKVE
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.039
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+YVGGL I+ DLE F ++G ++++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 220 KLSLGSTKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
++ LG+T R AF+ +EN+Q+A AC ++G + L V
Sbjct: 40 QIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
FAF+ ++ + AE+A +++NGTE+ G + V+
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 234 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 130
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +1
Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNG--TEMLGATLKVE 348
T++ R FAF+E+E+ ++AEDA ++G E G L+VE
Sbjct: 43 TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVE 82
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.1 bits (62), Expect = 0.83
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
G S F F+EF++ A A AMNG + G L++++S
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
FAF EF +EA +A A+ T +LG L ++
Sbjct: 763 FAFAEFVTAREAANAMRALKNTHLLGRHLVLQ 794
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 217 TKLSLGSTK---SPRFAFIEFENLQEAEDACSAMN 312
T +S+ TK S RFAFI F+N ++A+ A +N
Sbjct: 33 TDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLN 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
GS+K F F EF+N +AE A S ++G + G L + +
Sbjct: 348 GSSKG--FCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 232
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 122 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
+M T V+VGGL + ++DL+ F +G++ ++
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNI 326
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
F F EF + Q+ E AC +N ++ G ++V
Sbjct: 54 FGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 297 RIFRLLQVLKFYESEPGGFSATQTEFSF 214
R F+LL + F E E G SA+QT+F+F
Sbjct: 70 RYFKLLCSIGFKEIEVGFPSASQTDFAF 97
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 244
+++ L K+ D+EREF +YG + + V N
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
++ V++G L ++++E F K+GK+ +
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHI 328
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 240 SATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVP 136
S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 803 SSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 244 SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
S +AFIEFE+L A M+ + G L+ ++
Sbjct: 145 SKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 179 KEDLEREFDKYGKLNSVWVAL 241
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 208 IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
I + KL + F F+ F N ++ A MNG ++ TL V+
Sbjct: 245 IRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,945
Number of Sequences: 5004
Number of extensions: 44168
Number of successful extensions: 142
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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