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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0955
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)                 50   2e-06
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.014
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 36   0.031
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 36   0.055
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)                 35   0.095
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.095
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                34   0.17 
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                       34   0.17 
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             33   0.39 
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               32   0.67 
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)                        32   0.67 
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   1.6  
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)                 30   2.7  
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)                    30   2.7  
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)                 30   2.7  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)                 30   2.7  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  29   4.7  
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  29   6.3  
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)                   29   6.3  
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = +2

Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
           +RVY+G + +   K ++EREF+ +G L  VWVA NPPG
Sbjct: 2   SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPG 39



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           P FAF  FE+ ++AEDA   ++G  + G   +VE++
Sbjct: 38  PGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA 73


>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
          Length = 201

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +2

Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
           T++YVG L       +LER F+K+G+L+ VWVA NPPG
Sbjct: 4   TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPG 41



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +1

Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           P FAF+E+E+ ++AE+A   ++G  +   T++VE S
Sbjct: 40  PGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75


>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +2

Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
           T+VY+G L +   K ++E EF  YG L  VWVA NPPG
Sbjct: 32  TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPG 69



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           P FAF  F++ ++AEDA   ++G  + G  ++VE++
Sbjct: 68  PGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103


>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
           +A +E+E  +EA+ A  A+NG EMLG  + V+
Sbjct: 336 YALVEYETFKEAQSALEALNGAEMLGQNISVD 367


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
           P FAF+EFE+ ++AEDA    +G E  G  ++VE
Sbjct: 300 PPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVE 333



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           +S   RVYVG L + ++++DL   F KYG +  V
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADV 290


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           + F+EFE+ ++A+DA    NG EMLG  + VE S
Sbjct: 38  YGFVEFEDDRDADDAVYECNGKEMLGERILVEHS 71



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           RVY+G L  G  ++D+ R F  YG+L  +
Sbjct: 4   RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32


>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
          Length = 929

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           + F+EF++ ++AEDA   +NG +++G  + VE S
Sbjct: 724 YGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFS 757


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
           +S  F F+ F N ++A+ A  ++NG E+ G TLK+
Sbjct: 97  RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           TR++VGGL   I   +LEREFD++G +  +
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRI 347


>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATL 339
           KS  F F+ FE  +EAE+A + +NG E+ G  L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +2

Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           ++VG L E I++ED+ + F +YG++ SV
Sbjct: 8   LWVGNLPENIREEDIVKHFTRYGRVESV 35



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           ++VGG+   + ++ +ER F +YG++  V
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV 357


>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 125 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 220
           M+S GT+++VG L +  K  DLE  F  YGKL
Sbjct: 1   MASRGTQLFVGRLSKETKLRDLENVFYLYGKL 32


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           ++K   F F+EFE  ++   A   MN +E+ G T++V ++
Sbjct: 42  TSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81


>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 593

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
           K   + FIE+EN Q A DA ++MN  ++ G  L+V
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
           T+ PR FAF+ F + +  EDA + ++G E  G ++KV
Sbjct: 266 TQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKV 302


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
           + +S  + F++F   + A+ A   MNG E+ G  LK+
Sbjct: 279 TNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           +AF+ ++N  +A  A   MNG  +   TLKV  +
Sbjct: 70  YAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103


>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
          Length = 337

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           V+VG L   +KK+ L++ F KYG++ SV
Sbjct: 23  VFVGNLPLTLKKKALKKYFSKYGEVESV 50


>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
           F F+ ++N+  A++A   MNG ++    LKV++
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 337


>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
          Length = 486

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 256
           VYVG + +   K+D+ R F KYG +  V V     G+
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNGN 408


>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
           F F+ ++N+  A++A   MNG ++    LKV++
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 352


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
           T +YVGGL   + ++DL   F ++G+L S+
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSI 333


>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
          Length = 67

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLG 330
           + F+EF+   +AEDA    NG +MLG
Sbjct: 40  YGFVEFDYSDDAEDAVYECNGKKMLG 65


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 214
           S+   +V++GGL  G  +EDL+  F  YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 256 AFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
           AFI F + Q A++A +A+N  +M G T+K  I+
Sbjct: 54  AFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIA 86



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 235
           VYVG L   +   DL + F++YGK+  V +
Sbjct: 12  VYVGNLPYSLTNSDLHKVFERYGKVVKVTI 41


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 244
           +++VGGL     KE L+  F KYG+L  V + ++
Sbjct: 30  KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMD 63


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKL 220
           +V++G L  G+K  D+   F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
           FAF+++   +EAE    A NG ++ G+ ++V
Sbjct: 249 FAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279


>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
          Length = 842

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = +2

Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLN 223
           ++++GGL     +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210


>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 253 FAFIEFENLQEAEDACSAMNGTEMLG 330
           + F+EF++ ++A+D    +NG  +LG
Sbjct: 40  YGFVEFDDYRDADDCVYDLNGRNLLG 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,995,889
Number of Sequences: 59808
Number of extensions: 311602
Number of successful extensions: 735
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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