Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0955
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 50 2e-06
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.031
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 36 0.055
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 35 0.095
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.095
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.17
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.39
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 32 0.67
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.67
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.6
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 2.7
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 30 2.7
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 30 2.7
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 30 2.7
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 29 4.7
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 6.3
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 6.3
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
+RVY+G + + K ++EREF+ +G L VWVA NPPG
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPG 39
Score = 32.3 bits (70), Expect = 0.51
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
P FAF FE+ ++AEDA ++G + G +VE++
Sbjct: 38 PGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA 73
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
T++YVG L +LER F+K+G+L+ VWVA NPPG
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPG 41
Score = 36.7 bits (81), Expect = 0.024
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
P FAF+E+E+ ++AE+A ++G + T++VE S
Sbjct: 40 PGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
T+VY+G L + K ++E EF YG L VWVA NPPG
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPG 69
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
P FAF F++ ++AEDA ++G + G ++VE++
Sbjct: 68 PGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.5 bits (83), Expect = 0.014
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
+A +E+E +EA+ A A+NG EMLG + V+
Sbjct: 336 YALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 36.3 bits (80), Expect = 0.031
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 247 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
P FAF+EFE+ ++AEDA +G E G ++VE
Sbjct: 300 PPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVE 333
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
+S RVYVG L + ++++DL F KYG + V
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADV 290
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 35.5 bits (78), Expect = 0.055
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ F+EFE+ ++A+DA NG EMLG + VE S
Sbjct: 38 YGFVEFEDDRDADDAVYECNGKEMLGERILVEHS 71
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
RVY+G L G ++D+ R F YG+L +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 34.7 bits (76), Expect = 0.095
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ F+EF++ ++AEDA +NG +++G + VE S
Sbjct: 724 YGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFS 757
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 34.7 bits (76), Expect = 0.095
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
+S F F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.17
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
TR++VGGL I +LEREFD++G + +
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRI 347
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 33.9 bits (74), Expect = 0.17
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATL 339
KS F F+ FE +EAE+A + +NG E+ G L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
++VG L E I++ED+ + F +YG++ SV
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
Score = 30.3 bits (65), Expect = 2.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
++VGG+ + ++ +ER F +YG++ V
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV 357
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 125 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 220
M+S GT+++VG L + K DLE F YGKL
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKL 32
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 31.9 bits (69), Expect = 0.67
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
++K F F+EFE ++ A MN +E+ G T++V ++
Sbjct: 42 TSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
K + FIE+EN Q A DA ++MN ++ G L+V
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
T+ PR FAF+ F + + EDA + ++G E G ++KV
Sbjct: 266 TQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKV 302
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
+ +S + F++F + A+ A MNG E+ G LK+
Sbjct: 279 TNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+AF+ ++N +A A MNG + TLKV +
Sbjct: 70 YAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ ++N+ A++A MNG ++ LKV++
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 337
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 256
VYVG + + K+D+ R F KYG + V V G+
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNGN 408
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ ++N+ A++A MNG ++ LKV++
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 352
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
T +YVGGL + ++DL F ++G+L S+
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLG 330
+ F+EF+ +AEDA NG +MLG
Sbjct: 40 YGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 214
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 256 AFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
AFI F + Q A++A +A+N +M G T+K I+
Sbjct: 54 AFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIA 86
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 235
VYVG L + DL + F++YGK+ V +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTI 41
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 244
+++VGGL KE L+ F KYG+L V + ++
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMD 63
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKL 220
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
FAF+++ +EAE A NG ++ G+ ++V
Sbjct: 249 FAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 6.3
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLN 223
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLG 330
+ F+EF++ ++A+D +NG +LG
Sbjct: 40 YGFVEFDDYRDADDCVYDLNGRNLLG 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,995,889
Number of Sequences: 59808
Number of extensions: 311602
Number of successful extensions: 735
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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