Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0955
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 47 2e-05
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 47 2e-05
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 47 2e-05
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 41 0.001
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 41 0.001
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 37 0.016
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 37 0.016
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 37 0.016
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.063
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.063
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.063
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.063
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.063
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.59
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.59
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.59
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 32 0.59
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.59
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 31 0.78
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.78
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 31 0.78
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 31 0.78
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 0.78
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 0.78
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 1.4
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 1.4
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 30 1.8
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 30 1.8
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 2.4
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 2.4
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 3.1
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 3.1
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 4.2
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 29 4.2
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 4.2
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 29 4.2
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 28 9.6
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
+VYVGGL ++LE FD++G++ VWVA PPG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG 40
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +1
Query: 196 RVR*IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
R+R +W + + P FAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
+VYVGGL ++LE FD++G++ VWVA PPG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG 40
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +1
Query: 196 RVR*IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
R+R +W + + P FAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
+VYVGGL ++LE FD++G++ VWVA PPG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG 40
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +1
Query: 196 RVR*IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
R+R +W + + P FAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 223 LSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ + S + P FAF+EFE+ ++AEDA A +G E G ++VE +
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 125 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 223 LSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ + S + P FAF+EFE+ ++AEDA A +G E G ++VE +
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 125 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.1 bits (82), Expect = 0.016
Identities = 13/33 (39%), Positives = 26/33 (78%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
FAF++FE+ ++AEDAC ++G M G+++++ +
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.1 bits (82), Expect = 0.016
Identities = 13/33 (39%), Positives = 26/33 (78%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
FAF++FE+ ++AEDAC ++G M G+++++ +
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.1 bits (82), Expect = 0.016
Identities = 13/33 (39%), Positives = 26/33 (78%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
FAF++FE+ ++AEDAC ++G M G+++++ +
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
K + FIEF ++Q AE A +NG E+ G L+V+
Sbjct: 57 KPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
T PR FAFIEF A+ A MNG E G L+V ++
Sbjct: 42 TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
F F+EF++ ++AEDA +NG E+ G + ++ S
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
F F+EF++ ++AEDA +NG E+ G + ++ S
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
F F+EF++ ++AEDA +NG E+ G + ++ S
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
+AF+ N EA +A ++NGT + G TL+V
Sbjct: 416 YAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.59
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
+A +E+E +EA +A N T++LG +KV+
Sbjct: 98 YALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
KS F F+ F N +EAE A A++ + + G LK+ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 232
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
S K F F+EF+ ++A A MN +E+ G T++V +
Sbjct: 48 SGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
KS F F+ F N +EAE A A++ + + G LK+ +
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 294
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
KS F F+ F N +EAE A A++ + + G LK+ +
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 291
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
KS F F+ F N +EAE A A++ + + G LK+ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 214 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
F F++F++ ++A+DA +NG E+ G + +E
Sbjct: 37 FGFVDFQDQRDADDAVHDLNGKELCGERVILE 68
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
RVY+G L D+E F YGKL+ V
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV 31
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 214 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
FA++ FEN Q+ A S +NG + LKV
Sbjct: 55 FAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 122 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 220
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 122 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 220
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLG 330
K+ R+AF+ +E + A A MNG EM G
Sbjct: 270 KTQRYAFVRYEKKECATKAIMEMNGKEMAG 299
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ ++E++NL++AE + M+G ++ G + VE++
Sbjct: 177 YGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 256 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEIS 354
A +EFE+++ A+ A AMNG ++ TLKVE +
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFA 197
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 256 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEIS 354
A +EFE+++ A+ A AMNG ++ TLKVE +
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFA 197
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
T PR FAF+EF A+ A NG + G L+V ++
Sbjct: 41 TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 256
R+YV + +++DL F YG++ SV + N GS
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGS 89
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 208 IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
+ KTK+ + P +AF+EF + +A A MN +L +KV
Sbjct: 72 VTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNKRLLLDREMKV 116
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 256
R+YV + +++DL F YG++ SV + N GS
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGS 89
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
+ P FAF+ F+ A DA +NG ++ KVE+
Sbjct: 62 RPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
FAF+ FE+ +A A + +N M LKVE
Sbjct: 219 FAFVTFESRDDAARAIAELNDIRMYHMVLKVE 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,111
Number of Sequences: 27780
Number of extensions: 240952
Number of successful extensions: 764
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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