Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0955
(846 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 46 4e-05
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 46 4e-05
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 44 1e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 44 2e-04
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 36 0.034
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 36 0.045
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 36 0.045
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.045
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.045
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.045
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.045
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 35 0.059
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 35 0.059
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.078
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.078
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.14
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.18
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.24
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.24
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.24
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.32
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 33 0.32
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.32
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 33 0.32
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.32
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 32 0.42
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 32 0.42
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 32 0.42
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.42
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.42
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.55
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 32 0.55
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.55
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 32 0.55
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.73
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.73
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.73
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.73
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.73
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.96
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 30 1.7
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 30 1.7
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.7
At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p... 30 2.2
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 2.2
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 2.2
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 30 2.2
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 2.2
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 30 2.2
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 2.2
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 2.2
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 30 2.2
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 2.9
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 29 2.9
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.9
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 2.9
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 29 2.9
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.9
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 3.9
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 3.9
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 3.9
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 3.9
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 3.9
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 3.9
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 3.9
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 29 3.9
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 29 3.9
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 29 5.1
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 5.1
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 29 5.1
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 29 5.1
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 5.1
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 5.1
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 5.1
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 5.1
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 29 5.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 6.8
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 6.8
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 28 6.8
At1g05510.1 68414.m00563 expressed protein 28 6.8
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 9.0
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 9.0
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 9.0
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 9.0
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 9.0
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 28 9.0
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 9.0
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 9.0
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
TRVYVG L + + +LE EF +G L +VWVA PPG
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG 39
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
TRVYVG L + + +LE EF +G L +VWVA PPG
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG 39
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
+RVYVG L + + +LE EF +G + SVWVA PPG
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG 39
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
+RVYVG L + + +LE EF +G + SVWVA PPG
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG 39
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNG 315
+ P +AF++FE+ ++A DA A++G
Sbjct: 36 RPPGYAFLDFEDPRDARDAIRALDG 60
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P +AF+EFE+ ++A+DA +G + G L+VEI+
Sbjct: 43 RPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPG 253
MSS R +YVG L I+K ++E F KYG + + + + PPG
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPG 46
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 35.5 bits (78), Expect = 0.045
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P + F+EFE+ ++AEDA +G + G L+VE++
Sbjct: 43 RPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 217 TKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
T + T S A+IE+ N +EA A A+N TE+ G L VEI+
Sbjct: 376 TVVDCSITDSKHIAYIEYSNSEEAT-AALALNNTEVFGRALNVEIA 420
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
+A IE+E +EA+ A SAMNG E+L + V+
Sbjct: 138 YALIEYEKKEEAQSAISAMNGAELLTQNVSVD 169
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.045
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P +AF+EF++ ++AEDA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPG 253
MSS +R VYVG L I++ ++E F KYG + + V PPG
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG 46
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.5 bits (78), Expect = 0.045
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P +AF+EF++ ++AEDA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPG 253
MSS +R VYVG L I++ ++E F KYG + + V PPG
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG 46
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.045
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P +AF+EF++ ++AEDA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPG 253
MSS +R VYVG L I++ ++E F KYG + + V PPG
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG 46
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 35.1 bits (77), Expect = 0.059
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 134 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
G TR+YVG L + DLER F +YG++ V
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDV 40
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 46 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 79
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.1 bits (77), Expect = 0.059
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 134 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
G TR+YVG L + DLER F +YG++ V
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDV 40
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 46 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.078
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P +AF+EFE+ ++A+DA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPG 253
MSS +R +YVG L I++ ++E F KYG + + + + PPG
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPG 46
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.078
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+ P +AF+EFE+ ++A+DA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPG 253
MSS +R +YVG L I++ ++E F KYG + + + + PPG
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPG 46
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKL 220
++VGG+ + K+DLE EF K+GK+
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
S GG R++VGGL E + ++DL + F G +++V
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAV 39
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 247
GT +YV GL + +DLE F K GK+ S ++ + P
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEP 107
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 247
GT +YV GL + +DLE F K GK+ S ++ + P
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEP 106
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+S F FI FE+ + + A + MNG E+ G L++ ++
Sbjct: 258 RSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKL 220
G+R++VGGL + DLER F ++G +
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDI 33
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 214 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
K L S +S F FI F+ + ++A +AMNG ++ G T+ V+
Sbjct: 37 KVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVD 81
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 131 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
S G +Y+ L + + E L+ F +YG + S V LNP G
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG 369
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 256
T VYV L + I +++L + F K+G ++S V + G+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN 267
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 247
G +YV GL + + DLE F K GK+ V + L+P
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDP 80
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 247
G +YV GL + + DLE F K GK+ V + L+P
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDP 110
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 TKSPRF-AFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
T + RF FIE+ ++++AE A A+N +E+ G +K+E+S
Sbjct: 302 TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 TKSPRF-AFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
T + RF FIE+ ++++AE A A+N +E+ G +K+E+S
Sbjct: 315 TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 354
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+S + F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 234 RSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKL 220
+R++VGGL + + LE FD+YGK+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKL 220
+R++VGGL + + LE FD+YGK+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKI 38
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
KS F FI+FE+ + AE A AMN ++ LKV +
Sbjct: 99 KSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHV 135
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
G+ KS FAF+ +E+ + A +NG +LG T+KV+
Sbjct: 72 GTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
T ++VGGL + EDL++ F+++G++ SV
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSV 333
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKL 220
T+V+VGGL + E L R FD+YG +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDI 50
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
T VYV L E +DL+ F +YGK+ S V + G
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG 66
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNG 315
G KS F F+ FEN +A A ++NG
Sbjct: 64 GEGKSKGFGFVNFENADDAARAVESLNG 91
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
S G R+YVG L + ++DL + F+ +G + V V + G
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETG 322
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 179 KEDLEREFDKYGKLNSVWVALNPPG 253
KED++ E K+GKLN ++V N G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVG 512
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
T ++VGGL + EDL++ F ++G++ SV
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F FI +++ A++A + MNG ++ G LKV++
Sbjct: 382 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F FI +++ A++A + MNG ++ G LKV++
Sbjct: 373 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSV 229
V+VG ++ DLER FDKYG+++ V
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRV 31
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 259 FIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
F+EF +++ A+ A A+N TE+ G +K+E S
Sbjct: 262 FVEFFDVRSADAALKALNRTEIAGKRIKLEHS 293
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGSLS 262
+VYVG L + + KE LE F + GK+ S V+ P S S
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKS 217
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
G++KS F F+ F + ++ E A A+N + + G ++V
Sbjct: 213 GTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
S +S RF F +++++A +NG + G +KV I+
Sbjct: 113 SGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNIT 152
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 247
++VG L +G +EDL++ F G++ V + NP
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNP 249
>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
protein
Length = 314
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 326 NISVPFIALHASSASCKFSNSMKANLGDLV 237
++SVPFI LH SA C SN+ AN L+
Sbjct: 24 SVSVPFIMLHGISAQC--SNARDANFTQLL 51
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
GS +S F F++F +A A AM+G +LG L++ +
Sbjct: 77 GSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 256
T VYV L + I ++L++ F KYG ++S V + G+
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN 263
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 362 GTGPAEVGSEVGAAVTSGVVV--HSEVREEAGSTTHTVAAAAGRTIVT 499
GT PA + + + A + V H++ E+G HT+ A GRTI T
Sbjct: 494 GTTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+S FAF+ N+++ ++GTE LG LKV +
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNG 315
G KS F F+ FEN +A A A+NG
Sbjct: 259 GEGKSKGFGFVNFENSDDAARAVDALNG 286
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 259 FIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
F+EF +++ AE A A+N E+ G +KVE S
Sbjct: 293 FVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 259 FIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
F+EF +++ AE A A+N E+ G +KVE S
Sbjct: 293 FVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 214 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
KT L + K F F+ F ++A A M+G E+ G L V
Sbjct: 43 KTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTV 86
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
S +S F F+ F + EA+ A NG ++ G T+ V+
Sbjct: 71 SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVD 108
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 173 IKKEDLEREFDKYGKLNSV 229
+K+ED+E F +YGK+NSV
Sbjct: 127 VKREDVESFFSQYGKVNSV 145
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
KS +F FI F + QEA+ A N T + + + VEI+
Sbjct: 7 KSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIA 44
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
+S F F+ + + EAE A S M+G E+ G + V++
Sbjct: 42 RSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNG 315
G KS F F+ FEN ++A A A+NG
Sbjct: 260 GDGKSRCFGFVNFENPEDAARAVEALNG 287
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKL 220
T+V+VGGL + E L + F++YG++
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEI 50
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 235
+++VGGL I +E+ + FD++G + V V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 235
+++VGGL I +E+ + FD++G + V V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 143 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 235
+++VGGL I +E+ + FD++G + V V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 247
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 122 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
TM G + VYVGGL I +E + R F YG + +V
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTV 36
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 354
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 131 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 229
S + ++VGGL + +EDL + F +G++ SV
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
T VYV LVE DL+R F ++G++ S V + G
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEG 156
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 232 GSTKSPRFAFIEFENLQEAEDACSAMNG 315
G KS RF F+ FE + A A MNG
Sbjct: 154 GEGKSRRFGFVNFEKAEAAVTAIEKMNG 181
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 238 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 348
T+ P+ F FI FE+ +A+ A A+NG + G + VE
Sbjct: 103 TQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 125 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 214
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 125 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 214
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +S F F+ F++ + DA MNG E+ G + V
Sbjct: 43 SGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 125 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 214
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +S F F+ F++ + DA MNG E+ G + V
Sbjct: 43 SGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 125 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 214
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +S F F+ F++ + DA MNG E+ G + V
Sbjct: 43 SGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 244 SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +AF +++L + AC+A+NG +M TL V
Sbjct: 399 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 244 SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +AF +++L + AC+A+NG +M TL V
Sbjct: 399 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 244 SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +AF +++L + AC+A+NG +M TL V
Sbjct: 399 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 351
F F+ +++ A++A MNG + G LKV++
Sbjct: 392 FGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 220
S G R+YVG L G+ LE F++ GK+
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKV 275
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +S F F+ + QE + A +++NG ++ G ++V
Sbjct: 286 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 128 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 220
S G R+YVG L G+ LE F++ GK+
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKV 283
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 235 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 345
S +S F F+ + QE + A +++NG ++ G ++V
Sbjct: 294 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 330
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 140 TRVYVGGLVEGIKKEDLEREFDKYGKL 220
T+V+VGGL +++ R FD++G++
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEI 43
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 232
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 123
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 137 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 253
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 125
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 253 FAFIEFENLQEAEDACSAMNG-TEMLGATLKV 345
F FI+F L+ ++ A A+NG E+ G T+KV
Sbjct: 308 FGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 146 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 235
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNG 315
+S F F+ F N Q+A+ A + MNG
Sbjct: 183 RSRGFGFVSFRNQQDAQTAINEMNG 207
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNG 315
+S F F+ F N Q+A+ A + MNG
Sbjct: 191 RSRGFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 241 KSPRFAFIEFENLQEAEDACSAMNG 315
+S F F+ F N Q+A+ A + MNG
Sbjct: 187 RSRGFGFVSFRNQQDAQTAINEMNG 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,612
Number of Sequences: 28952
Number of extensions: 229946
Number of successful extensions: 882
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -