Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0954
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 39 8e-04
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 38 0.002
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 37 0.003
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 36 0.007
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 33 0.038
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 33 0.067
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.15
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.15
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.15
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.20
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 31 0.20
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 30 0.47
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.62
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.82
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 1.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 1.4
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 1.4
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 28 1.4
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 28 1.9
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.9
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 28 1.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 28 1.9
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 1.9
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 3.3
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 27 3.3
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 3.3
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 27 3.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 4.4
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 5.8
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 5.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 5.8
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 7.7
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 39.1 bits (87), Expect = 8e-04
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 30 AVLQDMHIKCFDTRT-DCS-KPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
+V D ++ D R D S KP+ S+ +AH + + FNP+ F LA+ D + +WD
Sbjct: 252 SVSYDQYLHVHDIRRPDASTKPARSV-HAHSGPIHSVAFNPHNDFILATCSTDKTIALWD 310
Query: 204 YRNGKEPIFNRTDH 245
RN + + H
Sbjct: 311 LRNLNQRLHTLEGH 324
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
H D+D+ PN + +A+A +D L IW
Sbjct: 381 HTSCTIDMDWCPNYNWTMATAAEDNILQIW 410
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
NPH D I +D R + ++ +++ H +V + F+P+ + LAS D
Sbjct: 290 NPHNDFILATCSTDKTIALWDLR-NLNQRLHTLEG-HEDIVTKISFSPHEEPILASTSAD 347
Query: 183 AALNIWD 203
+WD
Sbjct: 348 RRTLVWD 354
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 30 AVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209
+V D ++ DTR + + + + AH + + + NP + LA+A D + +WD R
Sbjct: 253 SVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLR 312
Query: 210 NGKEPIFNRTDH 245
N + + H
Sbjct: 313 NPYQRLHTLEGH 324
Score = 32.7 bits (71), Expect = 0.067
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
H +V D+ F+P + LAS DD L I D R E
Sbjct: 234 HTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPE 270
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 404 LQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVI 508
L + E HED VY EWS + AS S D R+ I
Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCI 352
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +3
Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
+D HI D R + + + AHRQ V L++N N LAS G+D AL +WD + +
Sbjct: 351 RDNHILHRDVRAP--EHYFRVLTAHRQEVCGLEWNSNENL-LASGGNDNALMVWD-KFEE 406
Query: 219 EPIFNRTDH 245
+P+++ +H
Sbjct: 407 KPLYSFHNH 415
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAH--RQLVRDLDFNPNRQFHLASAG 176
NP + + D I+ + + +P I +AH +Q + L F+ + + L S G
Sbjct: 259 NPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDGNY-LLSRG 317
Query: 177 DDAALNIWDYRNGKEPIFNRTD 242
+D AL +WD RN + + R D
Sbjct: 318 EDNALRVWDLRNSNKCVNERID 339
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 33.5 bits (73), Expect = 0.038
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 99 IDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPI 227
I AH VRD+ F+PN +A DD +L +W++ E +
Sbjct: 159 IVQAHEMEVRDVAFSPN-DSKFVTASDDGSLKVWNFHMSTEEL 200
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 32.7 bits (71), Expect = 0.067
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
+D IK +D T + +S H Q + LDF+ N +F ++ +GD A +WD G+
Sbjct: 380 EDRQIKLWDLSTQKVRYVFS---GHEQDIYSLDFSHNGRFIVSGSGDRTA-RLWDVETGQ 435
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Frame = +3
Query: 9 HQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNA--------HRQLVRDLDFNPNRQFHL 164
H G + +C TD W++++ H LV + FN N
Sbjct: 616 HVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNILVS- 674
Query: 165 ASAGDDAALNIWDYRNG 215
ASA D +L +WD G
Sbjct: 675 ASAPPDTSLRVWDLNTG 691
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H V + NP+RQ SAG DA + IW+ +G+
Sbjct: 616 HVGRVYSVTINPSRQ-QCISAGTDAKIRIWNLESGE 650
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
AH +V ++++PN F LAS G D + IWD + K+
Sbjct: 219 AHNGVVLCVNYSPNGVF-LASCGRDKTIRIWDSTSNKK 255
Score = 29.9 bits (64), Expect = 0.47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPI 227
N H + V LD + ++ +A D + +WDY+ I
Sbjct: 131 NEHSRAVHKLDISSFHPSYVLTASQDGLIKLWDYKESSSTI 171
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
QD IK +D + S ++ + + RD+ F+P+ +A D L WD R K
Sbjct: 155 QDGLIKLWDYKESSSTITF---RGNSEAARDVVFSPSEPNEFVAAYDSGILQKWDIRFPK 211
Query: 219 EPIFNRTDHS 248
P H+
Sbjct: 212 LPFLKLAAHN 221
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
H V D D+NP LAS GDD+ + IW
Sbjct: 80 HTAAVLDTDWNPFHDQVLASGGDDSKIMIW 109
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
+ H VR + F+P + + S GDD +N+W+Y++ K
Sbjct: 50 DGHDGPVRGIAFHPTQPLFV-SGGDDYKVNVWNYKSRK 86
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 31.1 bits (67), Expect = 0.20
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 57 CFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
C+ + + P + H+ V ++DF+P +AS DD L+IW
Sbjct: 354 CYVWNFNKANPLEFVHAGHKGTVNEVDFDPFEAQCIASVADDNELHIW 401
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRN 212
+ H + V + +NP + ASAGDD + IW ++
Sbjct: 467 SGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKD 502
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.5 bits (63), Expect = 0.62
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +2
Query: 272 NSYHEQLLLTGSSD--GRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVYCS 445
+SYH +L SS+ LL + ++ D + K + ++S+ H D V C
Sbjct: 250 DSYHTDAVLALSSNRNAHNLLVSGSA------DTTLKLWDLSTCNCVKSFTYHSDKVSCL 303
Query: 446 EWSTVEPWTFASLSYDARLVIRE-SLDRSNTNF 541
+W + P S SYD I + L+ + ++F
Sbjct: 304 DWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSF 336
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.1 bits (62), Expect = 0.82
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 162 LASAGDDAALNIWDYRNGKEPIFNRTDHS 248
LAS G+D + IWD R+ P F +T+H+
Sbjct: 319 LASGGNDNVVQIWDARS-SIPKFTKTNHN 346
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 162 LASAGDDAALNIWDYRNGKEPIFNRTDHS 248
LAS G+D L +WDYR+ + P+ +H+
Sbjct: 264 LASGGNDNNLFVWDYRSSR-PLHKFEEHT 291
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 139 KSRSRTNCLCALSMLQDGFEQSVRVSKHFMCISCRTAN 26
+S S +C C + + + QS K+ +CISC N
Sbjct: 230 QSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISCYQQN 267
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H+ VR L + + + LAS GDD L IW+ G+
Sbjct: 378 HKGRVRCLSVHVSGNW-LASGGDDGVLRIWEVMTGR 412
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H Q V D F PN + L +A D + WD R+G+
Sbjct: 325 HEQAVIDCKFLPNTPY-LLTACADCVIRKWDVRSGQ 359
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224
H V LD++ + +F L S DD L +WD N +P
Sbjct: 44 HTGCVNTLDWSADGEF-LLSGSDDTRLIVWDVFNEYKP 80
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDY 206
DM IKCF+ D S H + V L NP AS+ D + +W +
Sbjct: 119 DMTIKCFNW--DMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSF 171
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 108 AHRQLVRDLDFNP-NRQFHLASAGDDAALNIWDYR 209
AH + V +++ P + +L +AGDD + +WDY+
Sbjct: 182 AHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQ 216
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTDHSHW 254
+ H VR + F+P LA+AGD + I+D +G + + H+ W
Sbjct: 184 SGHTSPVRSVAFSPGSTL-LAAAGDSKMITIYDVLSG-DQVGQLRGHAAW 231
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTDHSHW 254
N H + F+P+ L + D +WD + + PI H++W
Sbjct: 131 NGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDC-DTQTPIATMKGHTNW 179
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
D I +D RT S P + R + +NP F+ + +D L ++D RN K
Sbjct: 209 DRSIVIYDLRT--SSPLTKLITKLR--TNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKR 264
Query: 222 PIFNRTDH 245
+ DH
Sbjct: 265 ALHVYKDH 272
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209
+ H V +D+ P +F LAS D +WD R
Sbjct: 186 SGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
AH ++F+P+ + HLA G DA ++WD
Sbjct: 192 AHNSNCFCIEFSPDNR-HLAIGGADAITSLWD 222
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H V+ L F N + + + DD+ + IWD R +
Sbjct: 374 HSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKSE 409
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 281 HEQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVY 439
+EQ++ + D GL+Y+ + SE+T IL D S++ ED+ Y
Sbjct: 119 YEQVIFQWNCDNEGLVYSQDGVPLQAFSGSERTDFILPD----SWKTTEDTFY 167
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
H+ V + + P + LA+ GDD +++WD
Sbjct: 314 HKGDVNAVKWMPGSKSKLATCGDDCVVSLWD 344
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 159 HLASAGDDAALNIWDYRNGKEPIFNRTD 242
H +G+D ++ +WD R GK F TD
Sbjct: 640 HKIISGNDGSVKLWDVRTGKLLRFLLTD 667
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNG 215
H + L F+ N HL S D ++ IWD R+G
Sbjct: 535 HTAPISSLQFDSN---HLYSGSYDNSVRIWDLRSG 566
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 159 HLASAGDDAALNIWDY 206
+LASA DD + IWD+
Sbjct: 110 YLASASDDKTIRIWDF 125
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 162 LASAGDDAALNIWDYRNGK 218
++S G+DA IWD R+GK
Sbjct: 322 VSSGGNDAIGRIWDLRSGK 340
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTD-HSHW 254
AH++ + +P+ + HLA+ DA +NIW + + R H W
Sbjct: 213 AHQRYITRCVLSPDVK-HLATCSADATVNIWSTEDMSFMLERRLQGHQRW 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,867
Number of Sequences: 5004
Number of extensions: 61434
Number of successful extensions: 291
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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