BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0954 (843 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 39 8e-04 SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 38 0.002 SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 37 0.003 SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 36 0.007 SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 33 0.038 SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 33 0.067 SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.15 SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.15 SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.15 SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.20 SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 31 0.20 SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 30 0.47 SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.62 SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.82 SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 1.1 SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 1.4 SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 1.4 SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 28 1.4 SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 28 1.9 SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.9 SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 28 1.9 SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 28 1.9 SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 1.9 SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 2.5 SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 3.3 SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 27 3.3 SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 3.3 SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 27 3.3 SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 4.4 SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 5.8 SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 5.8 SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 5.8 SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 7.7 >SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 431 Score = 39.1 bits (87), Expect = 8e-04 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +3 Query: 30 AVLQDMHIKCFDTRT-DCS-KPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203 +V D ++ D R D S KP+ S+ +AH + + FNP+ F LA+ D + +WD Sbjct: 252 SVSYDQYLHVHDIRRPDASTKPARSV-HAHSGPIHSVAFNPHNDFILATCSTDKTIALWD 310 Query: 204 YRNGKEPIFNRTDH 245 RN + + H Sbjct: 311 LRNLNQRLHTLEGH 324 Score = 28.3 bits (60), Expect = 1.4 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIW 200 H D+D+ PN + +A+A +D L IW Sbjct: 381 HTSCTIDMDWCPNYNWTMATAAEDNILQIW 410 Score = 27.9 bits (59), Expect = 1.9 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = +3 Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182 NPH D I +D R + ++ +++ H +V + F+P+ + LAS D Sbjct: 290 NPHNDFILATCSTDKTIALWDLR-NLNQRLHTLEG-HEDIVTKISFSPHEEPILASTSAD 347 Query: 183 AALNIWD 203 +WD Sbjct: 348 RRTLVWD 354 >SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces pombe|chr 3|||Manual Length = 430 Score = 37.5 bits (83), Expect = 0.002 Identities = 18/72 (25%), Positives = 34/72 (47%) Frame = +3 Query: 30 AVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209 +V D ++ DTR + + + + AH + + + NP + LA+A D + +WD R Sbjct: 253 SVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLR 312 Query: 210 NGKEPIFNRTDH 245 N + + H Sbjct: 313 NPYQRLHTLEGH 324 Score = 32.7 bits (71), Expect = 0.067 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221 H +V D+ F+P + LAS DD L I D R E Sbjct: 234 HTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPE 270 Score = 30.7 bits (66), Expect = 0.27 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +2 Query: 404 LQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVI 508 L + E HED VY EWS + AS S D R+ I Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCI 352 >SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 37.1 bits (82), Expect = 0.003 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = +3 Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 +D HI D R + + + AHRQ V L++N N LAS G+D AL +WD + + Sbjct: 351 RDNHILHRDVRAP--EHYFRVLTAHRQEVCGLEWNSNENL-LASGGNDNALMVWD-KFEE 406 Query: 219 EPIFNRTDH 245 +P+++ +H Sbjct: 407 KPLYSFHNH 415 >SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 35.9 bits (79), Expect = 0.007 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = +3 Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAH--RQLVRDLDFNPNRQFHLASAG 176 NP + + D I+ + + +P I +AH +Q + L F+ + + L S G Sbjct: 259 NPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDGNY-LLSRG 317 Query: 177 DDAALNIWDYRNGKEPIFNRTD 242 +D AL +WD RN + + R D Sbjct: 318 EDNALRVWDLRNSNKCVNERID 339 >SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 509 Score = 33.5 bits (73), Expect = 0.038 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 99 IDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPI 227 I AH VRD+ F+PN +A DD +L +W++ E + Sbjct: 159 IVQAHEMEVRDVAFSPN-DSKFVTASDDGSLKVWNFHMSTEEL 200 >SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosaccharomyces pombe|chr 1|||Manual Length = 614 Score = 32.7 bits (71), Expect = 0.067 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = +3 Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 +D IK +D T + +S H Q + LDF+ N +F ++ +GD A +WD G+ Sbjct: 380 EDRQIKLWDLSTQKVRYVFS---GHEQDIYSLDFSHNGRFIVSGSGDRTA-RLWDVETGQ 435 >SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1|Schizosaccharomyces pombe|chr 2|||Manual Length = 775 Score = 31.5 bits (68), Expect = 0.15 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Frame = +3 Query: 9 HQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNA--------HRQLVRDLDFNPNRQFHL 164 H G + +C TD W++++ H LV + FN N Sbjct: 616 HVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNILVS- 674 Query: 165 ASAGDDAALNIWDYRNG 215 ASA D +L +WD G Sbjct: 675 ASAPPDTSLRVWDLNTG 691 Score = 28.7 bits (61), Expect = 1.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 H V + NP+RQ SAG DA + IW+ +G+ Sbjct: 616 HVGRVYSVTINPSRQ-QCISAGTDAKIRIWNLESGE 650 >SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 846 Score = 31.5 bits (68), Expect = 0.15 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221 AH +V ++++PN F LAS G D + IWD + K+ Sbjct: 219 AHNGVVLCVNYSPNGVF-LASCGRDKTIRIWDSTSNKK 255 Score = 29.9 bits (64), Expect = 0.47 Identities = 11/41 (26%), Positives = 19/41 (46%) Frame = +3 Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPI 227 N H + V LD + ++ +A D + +WDY+ I Sbjct: 131 NEHSRAVHKLDISSFHPSYVLTASQDGLIKLWDYKESSSTI 171 Score = 29.9 bits (64), Expect = 0.47 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = +3 Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 QD IK +D + S ++ + + RD+ F+P+ +A D L WD R K Sbjct: 155 QDGLIKLWDYKESSSTITF---RGNSEAARDVVFSPSEPNEFVAAYDSGILQKWDIRFPK 211 Query: 219 EPIFNRTDHS 248 P H+ Sbjct: 212 LPFLKLAAHN 221 >SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 31.5 bits (68), Expect = 0.15 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIW 200 H V D D+NP LAS GDD+ + IW Sbjct: 80 HTAAVLDTDWNPFHDQVLASGGDDSKIMIW 109 >SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1207 Score = 31.1 bits (67), Expect = 0.20 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 + H VR + F+P + + S GDD +N+W+Y++ K Sbjct: 50 DGHDGPVRGIAFHPTQPLFV-SGGDDYKVNVWNYKSRK 86 >SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 408 Score = 31.1 bits (67), Expect = 0.20 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +3 Query: 57 CFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIW 200 C+ + + P + H+ V ++DF+P +AS DD L+IW Sbjct: 354 CYVWNFNKANPLEFVHAGHKGTVNEVDFDPFEAQCIASVADDNELHIW 401 >SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 507 Score = 29.9 bits (64), Expect = 0.47 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +3 Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRN 212 + H + V + +NP + ASAGDD + IW ++ Sbjct: 467 SGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKD 502 >SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 29.5 bits (63), Expect = 0.62 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Frame = +2 Query: 272 NSYHEQLLLTGSSD--GRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVYCS 445 +SYH +L SS+ LL + ++ D + K + ++S+ H D V C Sbjct: 250 DSYHTDAVLALSSNRNAHNLLVSGSA------DTTLKLWDLSTCNCVKSFTYHSDKVSCL 303 Query: 446 EWSTVEPWTFASLSYDARLVIRE-SLDRSNTNF 541 +W + P S SYD I + L+ + ++F Sbjct: 304 DWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSF 336 >SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 29.1 bits (62), Expect = 0.82 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 162 LASAGDDAALNIWDYRNGKEPIFNRTDHS 248 LAS G+D + IWD R+ P F +T+H+ Sbjct: 319 LASGGNDNVVQIWDARS-SIPKFTKTNHN 346 >SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 421 Score = 28.7 bits (61), Expect = 1.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 162 LASAGDDAALNIWDYRNGKEPIFNRTDHS 248 LAS G+D L +WDYR+ + P+ +H+ Sbjct: 264 LASGGNDNNLFVWDYRSSR-PLHKFEEHT 291 >SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 28.3 bits (60), Expect = 1.4 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -3 Query: 139 KSRSRTNCLCALSMLQDGFEQSVRVSKHFMCISCRTAN 26 +S S +C C + + + QS K+ +CISC N Sbjct: 230 QSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISCYQQN 267 >SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 H+ VR L + + + LAS GDD L IW+ G+ Sbjct: 378 HKGRVRCLSVHVSGNW-LASGGDDGVLRIWEVMTGR 412 >SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 399 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 H Q V D F PN + L +A D + WD R+G+ Sbjct: 325 HEQAVIDCKFLPNTPY-LLTACADCVIRKWDVRSGQ 359 >SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 809 Score = 27.9 bits (59), Expect = 1.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224 H V LD++ + +F L S DD L +WD N +P Sbjct: 44 HTGCVNTLDWSADGEF-LLSGSDDTRLIVWDVFNEYKP 80 >SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 796 Score = 27.9 bits (59), Expect = 1.9 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +3 Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDY 206 DM IKCF+ D S H + V L NP AS+ D + +W + Sbjct: 119 DMTIKCFNW--DMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSF 171 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 108 AHRQLVRDLDFNP-NRQFHLASAGDDAALNIWDYR 209 AH + V +++ P + +L +AGDD + +WDY+ Sbjct: 182 AHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQ 216 >SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 27.9 bits (59), Expect = 1.9 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +3 Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTDHSHW 254 + H VR + F+P LA+AGD + I+D +G + + H+ W Sbjct: 184 SGHTSPVRSVAFSPGSTL-LAAAGDSKMITIYDVLSG-DQVGQLRGHAAW 231 >SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 502 Score = 27.9 bits (59), Expect = 1.9 Identities = 12/50 (24%), Positives = 21/50 (42%) Frame = +3 Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTDHSHW 254 N H + F+P+ L + D +WD + + PI H++W Sbjct: 131 NGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDC-DTQTPIATMKGHTNW 179 >SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharomyces pombe|chr 2|||Manual Length = 436 Score = 27.9 bits (59), Expect = 1.9 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221 D I +D RT S P + R + +NP F+ + +D L ++D RN K Sbjct: 209 DRSIVIYDLRT--SSPLTKLITKLR--TNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKR 264 Query: 222 PIFNRTDH 245 + DH Sbjct: 265 ALHVYKDH 272 >SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 404 Score = 27.5 bits (58), Expect = 2.5 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209 + H V +D+ P +F LAS D +WD R Sbjct: 186 SGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220 >SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 309 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203 AH ++F+P+ + HLA G DA ++WD Sbjct: 192 AHNSNCFCIEFSPDNR-HLAIGGADAITSLWD 222 >SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 27.1 bits (57), Expect = 3.3 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218 H V+ L F N + + + DD+ + IWD R + Sbjct: 374 HSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKSE 409 >SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1077 Score = 27.1 bits (57), Expect = 3.3 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +2 Query: 281 HEQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVY 439 +EQ++ + D GL+Y+ + SE+T IL D S++ ED+ Y Sbjct: 119 YEQVIFQWNCDNEGLVYSQDGVPLQAFSGSERTDFILPD----SWKTTEDTFY 167 >SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 435 Score = 27.1 bits (57), Expect = 3.3 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203 H+ V + + P + LA+ GDD +++WD Sbjct: 314 HKGDVNAVKWMPGSKSKLATCGDDCVVSLWD 344 >SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosaccharomyces pombe|chr 1|||Manual Length = 703 Score = 26.6 bits (56), Expect = 4.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 159 HLASAGDDAALNIWDYRNGKEPIFNRTD 242 H +G+D ++ +WD R GK F TD Sbjct: 640 HKIISGNDGSVKLWDVRTGKLLRFLLTD 667 >SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 651 Score = 26.2 bits (55), Expect = 5.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNG 215 H + L F+ N HL S D ++ IWD R+G Sbjct: 535 HTAPISSLQFDSN---HLYSGSYDNSVRIWDLRSG 566 >SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 26.2 bits (55), Expect = 5.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 159 HLASAGDDAALNIWDY 206 +LASA DD + IWD+ Sbjct: 110 YLASASDDKTIRIWDF 125 >SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 26.2 bits (55), Expect = 5.8 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +3 Query: 162 LASAGDDAALNIWDYRNGK 218 ++S G+DA IWD R+GK Sbjct: 322 VSSGGNDAIGRIWDLRSGK 340 >SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces pombe|chr 2|||Manual Length = 314 Score = 25.8 bits (54), Expect = 7.7 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +3 Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTD-HSHW 254 AH++ + +P+ + HLA+ DA +NIW + + R H W Sbjct: 213 AHQRYITRCVLSPDVK-HLATCSADATVNIWSTEDMSFMLERRLQGHQRW 261 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,113,867 Number of Sequences: 5004 Number of extensions: 61434 Number of successful extensions: 291 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 290 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 416455520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -