Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0954
(843 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 68 7e-12
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 66 3e-11
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 44 2e-04
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 40 0.002
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 40 0.003
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 38 0.011
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 38 0.011
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 37 0.019
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 36 0.025
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 36 0.025
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 36 0.025
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 35 0.059
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 35 0.059
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 33 0.18
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 33 0.18
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 33 0.18
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 33 0.24
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 33 0.24
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 33 0.24
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 33 0.31
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 33 0.31
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 33 0.31
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 33 0.31
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 33 0.31
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 32 0.41
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 32 0.41
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 32 0.41
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 32 0.41
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 32 0.41
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 32 0.41
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 32 0.41
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 31 0.72
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 31 0.72
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 31 0.72
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 31 0.72
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.96
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 31 1.3
At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein con... 31 1.3
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 30 1.7
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 30 1.7
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 30 1.7
At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identi... 30 2.2
At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identi... 30 2.2
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 30 2.2
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 30 2.2
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 29 2.9
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 2.9
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 2.9
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 29 2.9
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 29 2.9
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 29 2.9
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 29 3.9
At3g42920.1 68416.m04503 hypothetical protein predicted proteins... 29 3.9
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 3.9
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 29 3.9
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 29 3.9
At1g74770.1 68414.m08663 expressed protein 29 3.9
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 29 3.9
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 29 3.9
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 29 5.1
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 5.1
At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein con... 29 5.1
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 29 5.1
At1g77400.1 68414.m09013 expressed protein 29 5.1
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 29 5.1
At1g34350.1 68414.m04264 expressed protein 29 5.1
At5g66290.1 68418.m08358 expressed protein 28 6.8
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 28 6.8
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 28 6.8
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 28 6.8
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 28 6.8
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 28 8.9
At4g30960.1 68417.m04395 CBL-interacting protein kinase 6 (CIPK6... 28 8.9
At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain... 28 8.9
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 28 8.9
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 28 8.9
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 68.1 bits (159), Expect = 7e-12
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 WTVRYNSYHEQLLLT-GSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDS 433
W VR N +E+L+L+ G+ L +A+AS + + + + +L SY +EDS
Sbjct: 256 WAVRCNPEYEELILSVGTDSAVNLWFASASSEHKTSESPVEASRQRVNPLLNSYTDYEDS 315
Query: 434 VYCSEWSTVEPWTFASLSYDARLVI 508
VY WS+ EPW FASLSYD R+VI
Sbjct: 316 VYGLAWSSREPWIFASLSYDGRVVI 340
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
NPH ++ A + I+ +D RT K + SI+ AH VR++D+N R+ L SA D+
Sbjct: 177 NPHDVNS-VAATSESSIQFWDLRT--MKKNNSIERAH---VRNVDYNLKREHILVSADDE 230
Query: 183 AALNIWDYRNGKEPIFNRTDHSHW 254
+ +++WD R K P+ H+HW
Sbjct: 231 SGIHLWDLRKTKFPVQELPGHTHW 254
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 WTVRYNSYHEQLLLTGSSDGR-GLLYAAASICRDPDDDSE-KTGKILEDGVLQSYEQHED 430
W VR N ++ L+L+ +D L YA+A+ D +S ++ + + +L SY +ED
Sbjct: 256 WAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTRQRVNPLLNSYTDYED 315
Query: 431 SVYCSEWSTVEPWTFASLSYDARLVI 508
SVY WS+ EPW FASLSYD R++I
Sbjct: 316 SVYGLAWSSREPWVFASLSYDGRVII 341
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
+PH + A + ++ +D RT K SI++AH VR +D+NP R+ L +A D+
Sbjct: 177 DPHDVNA-VAATGESSVQFWDLRT--MKKVNSIEHAH---VRGVDYNPKREHILVTAEDE 230
Query: 183 AALNIWDYRNGKEPIFNRTDHSHW 254
+ +++WD R K P+ H+HW
Sbjct: 231 SGIHVWDLRKAKVPVQELPGHTHW 254
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
+PH H+ L+D +K FDTR PS+ I +AH V + +N + LA+ D
Sbjct: 309 DPHSEHSFVVSLKDGTVKGFDTRASDLSPSFII-HAHDSEVSSISYNIHAPNLLATGSAD 367
Query: 183 AALNIWDYRNGK 218
++ +WD N +
Sbjct: 368 ESVKLWDLSNNQ 379
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 416 EQHEDSVYCSEWSTVEPWTFASLSYDARLVIRESLDRSNT 535
E HE V+ W+ P S S D +V+++ D SN+
Sbjct: 254 EHHEKKVHAVAWNNYTPEVLLSGSRDRTVVLKDGRDPSNS 293
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 99 IDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224
I N H+ V D+ F P+ S GDD+ L +WD R G P
Sbjct: 276 IYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSP 317
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSK----PSWSIDNAHRQLVRDLDFNPNRQFHLAS 170
NPH + D ++ FD R S P + + HR V + ++P++ S
Sbjct: 335 NPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEG-HRAAVLCVQWSPDKSSVFGS 393
Query: 171 AGDDAALNIWDY-RNGKE 221
+ +D LNIWD R GK+
Sbjct: 394 SAEDGLLNIWDCDRVGKK 411
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +2
Query: 302 GSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVYCSEWSTVEPWTFAS 481
GSS GLL C SE+ K DG+ + H D V WS + PWT S
Sbjct: 392 GSSAEDGLLNIWD--CDRVGKKSERATKT-PDGLFFQHAGHRDKVVDFHWSLLNPWTIVS 448
Query: 482 LS 487
+S
Sbjct: 449 VS 450
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 30 AVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209
+V D + +D RT S P+ ++ AH + +D+NP+ + + D + ++D R
Sbjct: 299 SVGDDSCLMLWDARTGTS-PAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRR 357
Query: 210 N 212
N
Sbjct: 358 N 358
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTDHSH 251
+ H V D+ F+P S GDD+ L +WD R G P+ + + +H
Sbjct: 289 HGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPV-TKVEKAH 336
Score = 35.1 bits (77), Expect = 0.059
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTR----TDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLAS 170
NPH + D ++ FD R P + + H+ V + ++P++ S
Sbjct: 346 NPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEG-HKAAVLCVQWSPDKSSVFGS 404
Query: 171 AGDDAALNIWDY 206
+ +D LNIWDY
Sbjct: 405 SAEDGLLNIWDY 416
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 353 DPDDDSEKTGKILED--GVLQSYEQHEDSVYCSEWSTVEPWTFASLSYD 493
D D S+K+ + + G+ + H D V W+ +PWT S+S D
Sbjct: 415 DYDRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDD 463
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDF-NPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTD 242
+AH V DL F NPNRQ + + GDD + +WD K F D
Sbjct: 449 DAHVGAVNDLAFANPNRQLCVITCGDDKLIKVWDVSGRKHFTFEGHD 495
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDC-----SKPSWSIDNAHRQLVRDLDFNPNRQFHLA 167
+PH H+ L+D +K FD R S PS++I N H + + +N + LA
Sbjct: 328 DPHSEHSFVVSLEDGTVKGFDVRQASISASESNPSFTI-NGHDEAATSVSYNISAPNLLA 386
Query: 168 SAGDDAALNIWDYRNGK 218
+ D + +WD N +
Sbjct: 387 TGSKDRTVKLWDLSNNE 403
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
D +K +D R+ + ++ N H VR + F+P+R+ +AS D ++ +WDY ++
Sbjct: 214 DKTVKVWDVRS--YRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSVCLWDYM-VED 270
Query: 222 PIFNRTDH 245
+ R DH
Sbjct: 271 ALVGRYDH 278
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/83 (24%), Positives = 34/83 (40%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
NP G + D ++ +D R S I AH + D+N LA++ D
Sbjct: 158 NPKHGDVFASASGDCTLRIWDVR---EPGSTMIIPAHDFEILSCDWNKYDDCILATSSVD 214
Query: 183 AALNIWDYRNGKEPIFNRTDHSH 251
+ +WD R+ + P+ H +
Sbjct: 215 KTVKVWDVRSYRVPLAVLNGHGY 237
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 30 AVLQDMHIKCFDTRTDC-SKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
A + D +K +DT S P S H + V+ +D+NP R+ ++ D + +W
Sbjct: 78 AAIGDGSVKIYDTALPPPSNPIRSFQE-HAREVQSVDYNPTRRDSFLTSSWDDTVKLW 134
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 36.3 bits (80), Expect = 0.025
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
NP++ T + D +K +D + K S N HR+ V L F+PN ++ +AS D
Sbjct: 507 NPNKQLTLASASFDSTVKLWDA--ELGKMLCSF-NGHREPVYSLAFSPNGEY-IASGSLD 562
Query: 183 AALNIWDYRNGK 218
+++IW + GK
Sbjct: 563 KSIHIWSIKEGK 574
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 36.3 bits (80), Expect = 0.025
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 90 SWSIDN----AHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRTDHS 248
SW++D H V DL ++P + AS D ++ +WD R GK P + H+
Sbjct: 257 SWAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHN 313
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 395 DGVLQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVI 508
D V+ +E H+ + EWS E T A S D +L I
Sbjct: 350 DAVVAHFEYHKHPITSIEWSAHEASTLAVTSGDNQLTI 387
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 36.3 bits (80), Expect = 0.025
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 99 IDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
I H + V +DF+PN +HLAS G+D IWD R K
Sbjct: 167 IFQGHIKQVLSVDFSPNG-YHLASGGEDNQCRIWDLRMRK 205
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 35.1 bits (77), Expect = 0.059
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 15 GHTQFAVLQDMHIKCFDTRTD-CSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAAL 191
G D +K +D RTD C +A + L+++ + LA+AG D
Sbjct: 950 GERVLTAAHDGTVKMWDVRTDMCVATVGRCSSA----ILSLEYDDSTGI-LAAAGRDTVA 1004
Query: 192 NIWDYRNGKEPIFNRTDHSHW 254
NIWD R+GK+ + H+ W
Sbjct: 1005 NIWDIRSGKQ-MHKLKGHTKW 1024
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224
H+ VR L+FN LAS DD + IWD N +P
Sbjct: 114 HKGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPSKP 151
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 39 QDMHIKCFD---TRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209
QD I +D T TD + H+ ++ D+ ++ + SAGDD L IWD R
Sbjct: 190 QDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLR 249
Query: 210 NGK 218
+
Sbjct: 250 TNQ 252
Score = 31.5 bits (68), Expect = 0.72
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
NP D + FD R + P + H V ++++PN + LAS+G+D
Sbjct: 270 NPFNEWVLATASSDSTVALFDLRK-LTAPLHVLSK-HEGEVFQVEWDPNHETVLASSGED 327
Query: 183 AALNIWDY-RNGKEPI 227
L +WD R G E +
Sbjct: 328 RRLMVWDINRVGDEQL 343
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDF-NPNRQFHLASAGDDAALNIWDYRNGK 218
+AH V DL F +PN+Q + + GDD + +WD K
Sbjct: 450 DAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWDLSGKK 488
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDD 182
NP D + FD R + P + ++H V ++++PN + LAS+G+D
Sbjct: 269 NPFNEWVLATASSDSTVALFDLRK-LNAPL-HVMSSHEGEVFQVEWDPNHETVLASSGED 326
Query: 183 AALNIWDY-RNGKEPI 227
L +WD R G+E +
Sbjct: 327 RRLMVWDLNRVGEEQL 342
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H + D+ ++ + SAG+D L IWD R +
Sbjct: 216 HESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQ 251
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H + V ++F+PN +HLAS G+D IWD R K
Sbjct: 422 HIKPVFSVNFSPNG-YHLASGGEDNQCRIWDLRMRK 456
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFN-PNRQFHLASAGDDAALNIWDYRNG 215
+AH V D+ F+ PN+Q + + GDD + +WD G
Sbjct: 459 DAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATG 496
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFN-PNRQFHLASAGDDAALNIWDYRNG 215
+AH V D+ F+ PN+Q + + GDD + +WD G
Sbjct: 459 DAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATG 496
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 99 IDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR--NGKEPIFNRTDHS 248
I AH +V D+ ++ ++ S GDD L IWD R + +P+ + HS
Sbjct: 222 IFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHS 273
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224
+ H+ VR L+FN LAS DD + IWD EP
Sbjct: 119 SVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEP 158
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 84 KPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAA---LNIWDYRNGKEPIFNRTDH 245
KP + ++ R+ L +NPN + A DD + L +WD RN P+ T H
Sbjct: 206 KPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDSSPTLKLWDMRNIMSPVREFTGH 262
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224
+ H+ VR L+FN LAS DD + IWD EP
Sbjct: 119 SVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEP 158
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 84 KPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAA---LNIWDYRNGKEPIFNRTDH 245
KP + ++ R+ L +NPN + A DD + L +WD RN P+ T H
Sbjct: 206 KPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDSSPTLKLWDMRNIMSPVREFTGH 262
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFN-PNRQFHLASAGDDAALNIWDYRNG 215
+AH V D+ F+ PN+Q + + GDD + +WD G
Sbjct: 459 DAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATG 496
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 456 PWSPGPSPLSATMRGWSSASPSTV 527
P+ P PSP+ + GW S SPS+V
Sbjct: 238 PFQPTPSPVPTPLAGWMS-SPSSV 260
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFN-PNRQFHLASAGDDAALNIWDYRNG 215
+AH V D+ F+ PN+Q + + GDD + +WD G
Sbjct: 459 DAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATG 496
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 456 PWSPGPSPLSATMRGWSSASPSTV 527
P+ P PSP+ + GW S SPS+V
Sbjct: 238 PFQPTPSPVPTPLAGWMS-SPSSV 260
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 32.3 bits (70), Expect = 0.41
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Frame = +3
Query: 15 GHTQF--AVLQDMHIKCFDTRTDCSKPSWSIDNAHRQL-------VRDLDFNPNRQFHLA 167
GHTQ +V+ H + + D S W ++ L + +D +A
Sbjct: 270 GHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESSALIA 329
Query: 168 SAGDDAALNIWDYR--NGKEPIFNRTDHSHW 254
+ G D L +WD R P+F + HS W
Sbjct: 330 AGGSDPILRVWDPRKPGTSAPVFQFSSHSSW 360
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 32.3 bits (70), Expect = 0.41
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Frame = +3
Query: 15 GHTQF--AVLQDMHIKCFDTRTDCSKPSWSIDNAHRQL-------VRDLDFNPNRQFHLA 167
GHTQ +V+ H + + D S W ++ L + +D +A
Sbjct: 270 GHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESSALIA 329
Query: 168 SAGDDAALNIWDYR--NGKEPIFNRTDHSHW 254
+ G D L +WD R P+F + HS W
Sbjct: 330 AGGSDPILRVWDPRKPGTSAPVFQFSSHSSW 360
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
DM+I+ ++ T + AH +R + +P + L+S+ DD + +WD+ NG
Sbjct: 78 DMYIRVYNYNT---MDKVKVFEAHSDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWENGWA 133
Query: 222 PIFNRTDHSHW 254
HSH+
Sbjct: 134 CTQIFEGHSHY 144
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLD-FNPNRQFHLASAGD 179
NP +T + D IK ++ + P++++D AH++ V +D F + +L + D
Sbjct: 151 NPKDTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSD 207
Query: 180 DAALNIWDYRNGKEPIFNRTDHSH 251
D +WDY+ K + H+H
Sbjct: 208 DHTAKVWDYQT-KSCVQTLDGHTH 230
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
DM+I+ ++ T + AH +R + +P + L+S+ DD + +WD+ NG
Sbjct: 78 DMYIRVYNYNT---MDKVKVFEAHSDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWENGWA 133
Query: 222 PIFNRTDHSHW 254
HSH+
Sbjct: 134 CTQIFEGHSHY 144
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLD-FNPNRQFHLASAGD 179
NP +T + D IK ++ + P++++D AH++ V +D F + +L + D
Sbjct: 151 NPKDTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSD 207
Query: 180 DAALNIWDYRNGKEPIFNRTDHSH 251
D +WDY+ K + H+H
Sbjct: 208 DHTAKVWDYQT-KSCVQTLDGHTH 230
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
DM+I+ ++ T + AH +R + +P + L+S+ DD + +WD+ NG
Sbjct: 78 DMYIRVYNYNT---MDKVKVFEAHSDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWENGWA 133
Query: 222 PIFNRTDHSHW 254
HSH+
Sbjct: 134 CTQIFEGHSHY 144
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLD-FNPNRQFHLASAGD 179
NP +T + D IK ++ + P++++D AH++ V +D F + +L + D
Sbjct: 151 NPKDTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSD 207
Query: 180 DAALNIWDYRNGKEPIFNRTDHSH 251
D +WDY+ K + H+H
Sbjct: 208 DHTAKVWDYQT-KSCVQTLDGHTH 230
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFN-PNRQFHLASAGDDAALNIWDYRNGKE 221
+AH V DL F+ PN+Q + + G+D + +WD G +
Sbjct: 461 DAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNK 500
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFN-PNRQFHLASAGDDAALNIWDYRNGKE 221
+AH V DL F+ PN+Q + + G+D + +WD G +
Sbjct: 461 DAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNK 500
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 117 QLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEP 224
Q++R LD++ + + L +AGDD +++WD G+ P
Sbjct: 179 QVLRLLDYSRSSRHLLVTAGDDGTVHLWD-TTGRSP 213
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
D IK +D T K + + H + VR L + NR ++ SAGDD + WD K
Sbjct: 197 DRTIKIWDVATGVLKLTLT---GHIEQVRGLAVS-NRHTYMFSAGDDKQVKCWDLEQNK- 251
Query: 222 PIFNRTDHSHWCG 260
R+ H H G
Sbjct: 252 --VIRSYHGHLSG 262
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRN 212
D HI +D R + S+P + + H++ V + F N + LASA D+ L +WD ++
Sbjct: 527 DHHIHYYDLR-NISQPL-HVFSGHKKAVSYVKFLSNNE--LASASTDSTLRLWDVKD 579
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 60 FDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRN--GKEP-IF 230
+D R S W + H + + +DFNP +A++ D +WD R+ K+P
Sbjct: 333 WDLRAGKSVFHWEL---HERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTL 389
Query: 231 NRTDHS 248
+ +HS
Sbjct: 390 STVNHS 395
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 123 VRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
V+ +D++P + L S G D + +WD R+G+E
Sbjct: 271 VKSVDWHPTKSL-LVSGGKDQLVKLWDTRSGRE 302
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209
HR V +DF+P+ + AS G D + IW +
Sbjct: 173 HRYEVLSVDFHPSDIYRFASCGMDTTIKIWSMK 205
>At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
thaliana]
Length = 524
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = +2
Query: 356 PDDDSEKTGKILEDGVLQSYEQHEDSVYCS------EWSTV-EPWTFASLSYD 493
P D ++ G L + +++ + ++ D V+ W T EPW FA YD
Sbjct: 162 PQDLEDEYGGFLSENIVKDFREYADYVFTEYGGKVKNWITFNEPWVFAHAGYD 214
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCS------KPSWSID-NAHRQLVRDLDFNPNRQFH 161
+PH H+ L+D +K FD R S P+++I +A + V + +N +
Sbjct: 360 DPHCEHSFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPNL 419
Query: 162 LASAGDDAALNIWDYRNGK 218
LA+ D ++ +WD N +
Sbjct: 420 LATGSMDKSVKLWDLSNNE 438
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
H+ V + + P+ H+ SAGDD+ IWD
Sbjct: 266 HQASVNAIAWAPHSSSHICSAGDDSQALIWD 296
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 138 FNPNRQFHLASAGDDAALNIWDYRNGK 218
F+P+ QF LAS+ D + +WDY +GK
Sbjct: 221 FSPDGQF-LASSSVDGFIEVWDYISGK 246
>At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identical
to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
glucohydrolase (GI:984052) [Arabidopsis thaliana]
Length = 522
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +2
Query: 356 PDDDSEKTGKILEDGVLQSYEQHEDSVYCS------EWSTV-EPWTFASLSYD 493
P D ++ G L +++ + ++ D V+ W T EPW FA YD
Sbjct: 160 PQDLEDEYGGFLSQNIVKDFREYADYVFTEYGGKVKNWITFNEPWVFAHAGYD 212
>At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identical
to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
glucohydrolase (GI:984052) [Arabidopsis thaliana]
Length = 524
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +2
Query: 356 PDDDSEKTGKILEDGVLQSYEQHEDSVYCS------EWSTV-EPWTFASLSYD 493
P D ++ G L +++ + ++ D V+ W T EPW FA YD
Sbjct: 162 PQDLEDEYGGFLSQNIVKDFREYADYVFTEYGGKVKNWITFNEPWVFAHAGYD 214
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYR 209
HR ++F+P +F LAS DA L IWD R
Sbjct: 99 HRSNCSAVEFHPFGEF-LASGSSDANLKIWDIR 130
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
DM+I+ ++ T + AH +R + +P + L+S+ DD + +WD+ G
Sbjct: 78 DMYIRVYNYNT---MDKVKVFEAHSDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWA 133
Query: 222 PIFNRTDHSHW 254
HSH+
Sbjct: 134 CTQIFEGHSHY 144
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLD-FNPNRQFHLASAGD 179
NP +T + D IK ++ + P++++D AH++ V +D F + +L + D
Sbjct: 151 NPKDTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSD 207
Query: 180 DAALNIWDYRNGKEPIFNRTDHSH 251
D +WDY+ K + H+H
Sbjct: 208 DHTAKVWDYQT-KSCVQTLEGHTH 230
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPI 227
+ H V + +NP LASA DD + IW +P+
Sbjct: 482 SGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGPGKPNKPL 522
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
AH + + F+P+ ++ LASAG+D L +W
Sbjct: 249 AHEGAILAMKFSPDGRY-LASAGEDGVLRVW 278
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
AH + + F+P+ ++ LASAG+D L +W
Sbjct: 249 AHEGAILAMKFSPDGRY-LASAGEDGVLRVW 278
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 108 AHRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
AH+ + + F+P+ LASAG+D A+++W+
Sbjct: 409 AHQGGIWTMKFSPDSHL-LASAGEDCAIHVWE 439
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKEPIFNRT 239
HR V D+ + + F + SA DD+ + +WD R ++ I R+
Sbjct: 1080 HRSAVNDIATSSDHSFFV-SASDDSTVKVWDSRKLEKDISFRS 1121
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 39 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNR-QFHLASAGDDAALNIWDYRNG 215
+D IK ++T +C HR V + F+PN Q + SA D + +W+ N
Sbjct: 125 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 184
Query: 216 K 218
K
Sbjct: 185 K 185
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNG 215
H + D+ F+ + +F + SA DD L +WD G
Sbjct: 70 HENGISDVAFSSDARF-IVSASDDKTLKLWDVETG 103
>At3g42920.1 68416.m04503 hypothetical protein predicted proteins,
Arabidopsis thaliana
Length = 141
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 81 SKPSWSIDNAHRQLVRDLDFNPNRQFHLASAG 176
+KP+WS+ + LVR LD N + + + AG
Sbjct: 58 NKPAWSVTSGLYFLVRQLDINKSNEIWVVYAG 89
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
D IK +D T K + + H VR L + NR ++ SAGDD + WD K
Sbjct: 191 DRTIKIWDVATGVLKLTLT---GHIGQVRGLAVS-NRHTYMFSAGDDKQVKCWDLEQNK- 245
Query: 222 PIFNRTDHSHWCG 260
R+ H H G
Sbjct: 246 --VIRSYHGHLHG 256
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
H + V D DF+ + ++ L +A D +W R GKE
Sbjct: 258 HERWVWDCDFSMDGEY-LVTASSDTTARLWSMRAGKE 293
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
+ H + V F P R F +A+ G+D +N +D
Sbjct: 5 DGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYD 37
>At1g74770.1 68414.m08663 expressed protein
Length = 985
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 750 WPSQEPNAQLKNERHFFNIDFNWKFHIFTKISLV 649
+P+ E QLKN H F+ID + F K+S +
Sbjct: 674 FPALEAKGQLKNISHSFSIDHELETKHFDKVSFI 707
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 147 NRQFHLASAGDDAALNIWDYRNGKEPIFN 233
N +L SAG D+ + +WD +G+ + N
Sbjct: 322 NDGMYLLSAGSDSRIRLWDIESGRNTLVN 350
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWD 203
H+ V + + P+ H+ +AGDD+ IWD
Sbjct: 266 HQASVNAIAWAPHSSCHICTAGDDSQALIWD 296
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H V L ++P +A+A D ++ +WD R+GK
Sbjct: 65 HTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGK 100
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNG 215
H +V LDF+P + + S +D + W NG
Sbjct: 735 HSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNG 769
>At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
almost identical to beta-glucosidase GI:1732570 from
[Arabidopsis thaliana]; similar to beta-glucosidase 1
(GI:12043529) [Arabidopsis thaliana]
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = +2
Query: 356 PDDDSEKTGKILEDGVLQSYEQHEDSVY------CSEWSTV-EPWTFASLSYD 493
P D ++ G L + +++ + ++ D V+ W T EPW F+ YD
Sbjct: 161 PQDLEDEYGGFLSERIVKDFREYADFVFQEYGGKVKHWITFNEPWVFSHAGYD 213
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 NPHQGHTQFAVLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLD-FNPNRQFHLASAGD 179
NP +T + D IK ++ + P++++D AH + V +D F + +L + D
Sbjct: 151 NPKDTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHLKGVNCVDYFTGGDKPYLITGSD 207
Query: 180 DAALNIWDYRNGKEPIFNRTDHSH 251
D +WDY+ K + H+H
Sbjct: 208 DHTAKVWDYQT-KSCVQTLEGHTH 230
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 42 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGKE 221
DM I+ ++ T + AH +R + +P + L+S+ DD + +WD+ G
Sbjct: 78 DMFIRVYNYNT---MDKIKVFEAHADYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWL 133
Query: 222 PIFNRTDHSHW 254
HSH+
Sbjct: 134 CTQIFEGHSHY 144
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 407 QSYEQHEDSVYCSEWSTVEPWTFAS 481
+S + E+ YCS+ T+ PWT +S
Sbjct: 172 KSGSRSENDYYCSDMETMSPWTVSS 196
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRN 212
H VR + F+ N Q S GDD + +W+Y+N
Sbjct: 50 HEGPVRGVHFH-NSQPLFVSGGDDYKIKVWNYKN 82
>At1g34350.1 68414.m04264 expressed protein
Length = 163
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 371 EKTGKILEDGVLQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVIRESLDRSNTNFY 544
EK L G +Y+ + +W EPW +++ A L++ L R + NF+
Sbjct: 20 EKLSGELRTGFQPAYDNFLGFFHAIDWK--EPWIMGLMAFHALLLLVTLLSRRHLNFH 75
>At5g66290.1 68418.m08358 expressed protein
Length = 202
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 462 SPGPSPLSATMRGWSSASPSTVQIQTST 545
S GP L +T+ +S ASP +V I T+T
Sbjct: 167 SEGPESLRSTVAPFSLASPDSVSINTTT 194
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 111 HRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
H+ V L +N N L S DD +NIW+Y + K
Sbjct: 49 HQGCVNALAWNSNGSL-LISGSDDLRINIWNYSSRK 83
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 162 LASAGDDAALNIWDYRNGK 218
+ S G+DAA+ IWD GK
Sbjct: 190 IVSGGEDAAIRIWDAETGK 208
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 120 IVYARCLCSKMVSSSQCACRSILCAYLAEQQTEC 19
++YA SK+VS CA +L AYLA +Q +C
Sbjct: 168 LLYAPSFSSKVVS---CASAEVLQAYLAWRQQDC 198
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIWD-YRNGK 218
+ H + V + F P + L SAG D + IWD Y +GK
Sbjct: 279 SGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGK 317
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 42 DMHIKCFDTR-TDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNGK 218
D C+D R + + H V + NP+ + + + D L +WD R+
Sbjct: 185 DCKFSCWDIRDSPADNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWDTRSVS 244
Query: 219 EPIFNRTDHS 248
P+ N T S
Sbjct: 245 RPL-NETSVS 253
>At4g30960.1 68417.m04395 CBL-interacting protein kinase 6 (CIPK6)
identical to CBL-interacting protein kinase 6
[Arabidopsis thaliana] gi|9280634|gb|AAF86505
Length = 441
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 36 LQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHLASAGDDAALNIWDYRNG 215
L +M+ K + R D P W +A R + + LD NPN + + D R+
Sbjct: 229 LVNMYRKIY--RGDFKCPGWLSSDARRLVTKLLDPNPNTRITIEKVMDSPWFKKQATRSR 286
Query: 216 KEPI 227
EP+
Sbjct: 287 NEPV 290
>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 317
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 36 LQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRD 131
L+D+ +KC D K W + QLV++
Sbjct: 263 LKDLKLKCSDLEAQLDKVKWKCSDLEAQLVKE 294
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 257 WTVRYNSYHEQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSV 436
W S H L G SD R ++++ + +D S + E+ Q+Y+ S+
Sbjct: 644 WDESLTSQHNFAKLLGQSDHRASTLESSNLLKQHNDQSRFSFARHEESNSQAYDNRSYSI 703
Query: 437 Y 439
Y
Sbjct: 704 Y 704
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 105 NAHRQLVRDLDFNPNRQFHLASAGDDAALNIW 200
N H+ + L F+P+ ++ LA+ G+D + IW
Sbjct: 195 NGHKGKIWTLKFSPDGKY-LATGGEDGVVKIW 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,647
Number of Sequences: 28952
Number of extensions: 325427
Number of successful extensions: 1165
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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