Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0953
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   1.9  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.9  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    26   7.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   7.7  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 249 MDANNDTTMKSGDHILKFNRWXXXXXXXXXXXKQNITNVNSSNDIKLKKNI 97
           +D NND++  S +H++ FN               +I + N  ++I+  K +
Sbjct: 691 LDDNNDSSSSSSEHLISFNNHTGNKILSRQTTSSSIDSNNVQSNIEFLKGL 741


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 740 PQLFPGSIPPLQDTMFAHQ 684
           PQ+FPG+ P LQ ++F  Q
Sbjct: 637 PQVFPGNYPRLQQSLFPRQ 655


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 627 YYPKKGSVRYNVNYRLPP 680
           +Y +KG+ RYN++Y+  P
Sbjct: 53  FYTEKGTFRYNIDYKDSP 70


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 229 GIVVGVHRSHGRVESPPS--RASAWRAGFPTEPDYD 330
           G +  VH+ HG V+  PS  R  +    F  +PDY+
Sbjct: 598 GTITTVHKKHGSVDHLPSVKRRRSIANDFHGKPDYN 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,398
Number of Sequences: 5004
Number of extensions: 74264
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)