Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0953
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0561 - 4418452-4418658,4420168-4420509                           31   1.1  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    31   1.5  
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078     30   2.7  
05_07_0154 - 28059097-28060641                                         29   3.5  
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422...    29   3.5  
04_03_0773 + 19451697-19451872,19452460-19452532,19452757-19452960     29   6.1  
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306...    28   8.1  

>11_01_0561 - 4418452-4418658,4420168-4420509
          Length = 182

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 239 LASIEATVV-LNRLPRAHRPGVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGTT 415
           L ++ +TVV ++RL RAH P VP          T +      ++G  +  +  +AG+ T 
Sbjct: 34  LGNVSSTVVDVDRL-RAHAPPVPPPSAPPVPPETMNPPPRRQLTGEFVDVELGNAGLSTV 92

Query: 416 RRHR 427
           RR R
Sbjct: 93  RRRR 96


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 238 VGVHRSHGRVESPPSRASAWRAG 306
           + V RS GR E+PPS  S W+ G
Sbjct: 390 ISVPRSPGRTENPPSPGSRWKKG 412


>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
          Length = 574

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 488 GRFSQRPPPDHFTFGLLGVQTMP 556
           G F QRPPPD +  G L + + P
Sbjct: 409 GEFDQRPPPDSYDHGSLNLSSPP 431


>05_07_0154 - 28059097-28060641
          Length = 514

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 555 PDPKDNAQDCFDQYPLELENG 617
           P P+   +DC D+YP+EL +G
Sbjct: 485 PSPESPWEDCIDRYPVELVDG 505


>01_06_1655 +
           38940790-38940864,38941245-38942057,38942149-38942268,
           38942883-38943566
          Length = 563

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 266 LNRLPRAHRPGVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGTTRRHRDP 433
           +  L +A   G    P N  +    S     G  GA  A D +  G G +R+H +P
Sbjct: 8   ITALKKAFTSGPKDKPTNGQLVAQYSHQHRSGGGGAAAARDKKRWGFGRSRQHAEP 63


>04_03_0773 + 19451697-19451872,19452460-19452532,19452757-19452960
          Length = 150

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 842 SXPSDFPYRYXQNKPPNCSWF 780
           S PSD PY Y  N+ P+C  F
Sbjct: 119 SAPSDGPYNYGYNEDPDCLTF 139


>05_05_0045 +
           21830291-21830343,21830446-21830541,21830620-21830694,
           21831329-21831403,21831497-21831719,21831813-21832056,
           21832621-21832769,21832913-21832944,21832991-21833078,
           21833157-21833438,21833542-21834243
          Length = 672

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -1

Query: 328 HSLVLWGNRHARPMRAREAIQHDRGFDGRQQRYHDEEWRPHLKI*PVEIKKKQTLEIHKT 149
           H ++ W + +          ++DR F+ + Q+   EE++       VEIK +  +EIH +
Sbjct: 304 HKVLCWDDYYTENSMNGFVKRYDRFFNEKLQKEDSEEFQTSND--KVEIKTRSPIEIHAS 361

Query: 148 KHY 140
           + Y
Sbjct: 362 QVY 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,964,214
Number of Sequences: 37544
Number of extensions: 590037
Number of successful extensions: 1615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)