Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0953
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         71   1e-12
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         64   1e-10
SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   9e-09
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              53   3e-07
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          52   4e-07
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)                 28   8.2  

>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +1

Query: 256 HGRVESPPSRASAWRAGFPTEP-DYDDDGVNCGGMWHQWSYNRGRCGICGDRYDAPTPRP 432
           HG +++P +R    + GF   P +Y  D  NCGG+  QW  N G+CG+CGDRYD P P  
Sbjct: 19  HGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKNGGKCGVCGDRYDNPKP-T 77

Query: 433 HELGGRYGDGIIVAHYNPGAIF 498
               G++  G I   Y  G +F
Sbjct: 78  LVYPGKFATGTITGIYKEGQLF 99



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +3

Query: 495 FHNDRHLTTSHLGFWEFKLCPDPKDNAQDCFDQYPLELENGGTKY-YPKKGSVRYNVNYR 671
           F  + H+T SH G+ EF++              + L+LE+G T++ +P K  + Y +  +
Sbjct: 99  FELELHITVSHKGWSEFRVGDIGAPPITQAKLNHLLKLEDGTTRWMHPGKIGL-YKIMLQ 157

Query: 672 LPPGLVCEHCVLQW 713
           LP GL C HCVLQW
Sbjct: 158 LPAGLKCRHCVLQW 171


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +1

Query: 256 HGRVESPPSRASAWRAGFPT-EPDYDDDGVNCGGMWHQWSYNRGRCGICGDRYDAPTPRP 432
           HG + +P +R +  + GF     ++  D  NCGG+  QW  N G+CG+CGDRYD P P  
Sbjct: 19  HGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDNGGKCGVCGDRYDNPKP-T 77

Query: 433 HELGGRYGDGIIVAHYNPGAIF 498
               G++  G I   Y  G +F
Sbjct: 78  LVYPGKFATGTITGIYKEGQLF 99



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +3

Query: 495 FHNDRHLTTSHLGFWEFKLCPDPKDNAQDCFDQYPLELENGGTKY-YPKKGSVRYNVNYR 671
           F    ++T SH G+ EF++              + L+LE+G T++ +P K  + Y +  +
Sbjct: 99  FELQLNITVSHKGWSEFRVGDIGTPPITQAKLNHLLKLEDGTTRWMHPGKAGL-YKIMLQ 157

Query: 672 LPPGLVCEHCVLQW 713
           LP GL C HCVLQW
Sbjct: 158 LPAGLKCRHCVLQW 171


>SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 217 TLHRGIVVGVHRSHGRVESPPSRASAWRAGFP--TEPDYDDDGVNCGGMWHQWSYNRGRC 390
           TL    VV +   HG ++ P +R   +R  FP  T   +  D +NCGG   Q   N G+C
Sbjct: 7   TLLVASVVTLVSGHGFIQEPAARQVCYRE-FPKCTSVHWTPDELNCGGFSTQNDKNGGKC 65

Query: 391 GICGDRYDAPTPRPHELGGRYGDGIIVAHYNPGAIFT 501
           G+CGD Y   T +     G++  G+I   Y  G  FT
Sbjct: 66  GVCGDAYHL-TDKAFVYPGKFALGVITGTYQEGQTFT 101


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 256 HGRVESPPSR--ASAWRAGFPTEPDYDDDGVNCGGMWHQWSYNRGRCGICGDRYDAPTPR 429
           HG +  PP+R    A +   P   ++  + +NCGG  +QW    G+CG+CGD Y   T R
Sbjct: 20  HGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGGKCGVCGDPY-GKTQR 78

Query: 430 PHELGGRYGDGII 468
            H  GG +  G+I
Sbjct: 79  -HTEGGEFAKGVI 90


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +1

Query: 235 VVGVHRSHGRVESPPSRASAWRAGFPTE--PDYDDDGVNCGGMWHQWSYNRGRCGICGDR 408
           V+ VH  HG +  P +R + +   FP +   +Y+ +   CGG   Q + N  +CG+CGD 
Sbjct: 16  VLLVH-GHGYMIEPAARNACYMK-FPNQCVRNYNANEQFCGGRATQIA-NGNKCGVCGDS 72

Query: 409 YDAPTPRPHELGGRYGDGIIVAHYNPGAIFT 501
           Y  P+P PH   G+Y  G I   Y  G I +
Sbjct: 73  YSNPSP-PHVYPGKYATGFITQTYTQGQIIS 102



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 510 HLTTSHLGFWEFKLCPDPKDNAQDCFDQYPLELENGGTKY-YPKKGSVRYNVNYRLPPGL 686
           H+T +H G++E+++                L    G T++     GS        LP  L
Sbjct: 106 HITANHQGWFEYRIGKIGTPPITQSKLTQLLASAEGQTRFPLTGSGSSYETQTLVLPADL 165

Query: 687 VCEHCVLQW 713
            C+HCV+QW
Sbjct: 166 TCDHCVIQW 174


>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
          Length = 491

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 816 IXSEQAPELLLVSXKPXPXVPIAAHSPVISR 724
           + SE    L  VS KP P  PIA+ +P +SR
Sbjct: 202 LDSEGRMRLNTVSSKPPPLKPIASLAPTVSR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,628,946
Number of Sequences: 59808
Number of extensions: 631328
Number of successful extensions: 1839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)