Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0953
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83318-4|CAB05900.1|  145|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U55373-11|AAQ62457.1|  139|Caenorhabditis elegans Hypothetical p...    28   7.2  

>Z83318-4|CAB05900.1|  145|Caenorhabditis elegans Hypothetical
           protein F55B11.4 protein.
          Length = 145

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 28/96 (29%), Positives = 40/96 (41%)
 Frame = -2

Query: 756 PIAAHSPVISRKYTSTARHNVRTPSQGVVCSSHCTSHYLSLGSI*SPHFLAQGGIDRSNL 577
           PI  H P  S  YT T        S+G  C+  C +     G+    H L   G+D  N 
Sbjct: 32  PITQHCPRHSGCYTMTTNFGQTVISKG--CAHDCQNLPPREGA----HCLLCKGLDFCNS 85

Query: 576 ARCPLGQGIV*TPRSPNVKWSGGGRCENRPGIVMGH 469
            +  +GQG +   + P  +  GG   +N  G  +GH
Sbjct: 86  PQTEIGQGTIMRQQPPPPQIGGGAVPDN--GYHIGH 119


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 298 ARPMRAREAIQH-DRGFDGRQQRYHDEEWR 212
           +RP++  E I+H +RG+D RQ  Y D + R
Sbjct: 734 SRPLKKVEIIRHPERGYDRRQPSYEDSKPR 763


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 726 RKYTSTARHNVRTPSQGVVCS-SHCTSHYLSLGSI 625
           +K+T+T ++ V + S G++C   HCT    S+ ++
Sbjct: 293 KKHTTTGKNEVMSESSGLICPVEHCTIRCDSIATV 327


>U55373-11|AAQ62457.1|  139|Caenorhabditis elegans Hypothetical
           protein F26F12.5b protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 667 TDYPLAWCANIVSCSGGILPGNNWGVCSNWYSXXGLXGNQEQF 795
           T Y   +   I    GG  PG+  G  S W +  GL GN   F
Sbjct: 94  TGYQYPYTNGIFPLQGGYYPGSIVGSGSIWAAGGGLVGNMLSF 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,959
Number of Sequences: 27780
Number of extensions: 456821
Number of successful extensions: 1152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)