Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0953
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   8.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   8.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 543 TPRSPNVKWSGGGRCENRP 487
           TPRSP   W G      RP
Sbjct: 912 TPRSPGRAWPGDSDIRQRP 930



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 92  TFSIQIVSY*NAGPKYILLYTK*LNANVL 6
           +F+ Q++   NA  +  LLY   ++ANV+
Sbjct: 216 SFTQQLIEMKNAQARVYLLYASKMDANVI 244


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 361 HQWSYNRGRCGICGDR 408
           H  S ++  C ICGDR
Sbjct: 101 HPLSGSKHLCSICGDR 116


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 687 PSQGVVCSSHCTSHYLSLGSI*SPHFL 607
           PS  VVC +     Y +LGS   P F+
Sbjct: 191 PSHCVVCQNFFYQIYATLGSFYIPLFV 217


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 361 HQWSYNRGRCGICGDR 408
           H  S ++  C ICGDR
Sbjct: 101 HPLSGSKHLCSICGDR 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,519
Number of Sequences: 438
Number of extensions: 5482
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)