Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0953
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28550.2 68415.m03469 AP2 domain-containing transcription fac...    29   2.9  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    29   2.9  
At4g28910.2 68417.m04132 expressed protein                             29   5.1  
At4g28910.1 68417.m04131 expressed protein                             29   5.1  
At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein ...    28   6.8  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    28   8.9  
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    28   8.9  

>At2g28550.2 68415.m03469 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 381

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
 Frame = +1

Query: 235 VVGVHRSHGRVESPPSRASAWRAGFPTEPD----YDDDGVNCGGMWHQWSYNRGRCGICG 402
           ++ V  S G  ESP + AS  +  FP   D     D +G +    W   S++R   G   
Sbjct: 66  ILKVGSSSGGDESPAASASVTKEFFPVSGDCGHLRDVEGSSSSRNWIDLSFDRIGDGETK 125

Query: 403 DRYDAPTPRP---HELGGRYGDGIIVAHYNPGAIFTTTAT*PLHIWASGSSNY 552
                PTP P        R G     + Y     +  T     HIW  G   Y
Sbjct: 126 LVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVY 178


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
 Frame = +1

Query: 235 VVGVHRSHGRVESPPSRASAWRAGFPTEPD----YDDDGVNCGGMWHQWSYNRGRCGICG 402
           ++ V  S G  ESP + AS  +  FP   D     D +G +    W   S++R   G   
Sbjct: 66  ILKVGSSSGGDESPAASASVTKEFFPVSGDCGHLRDVEGSSSSRNWIDLSFDRIGDGETK 125

Query: 403 DRYDAPTPRP---HELGGRYGDGIIVAHYNPGAIFTTTAT*PLHIWASGSSNY 552
                PTP P        R G     + Y     +  T     HIW  G   Y
Sbjct: 126 LVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVY 178


>At4g28910.2 68417.m04132 expressed protein
          Length = 425

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 308 KPARQADAREGGDSTRPWLRWTPTT 234
           KP   AD + GG   RP L W  TT
Sbjct: 340 KPGMAADVKFGGSGARPNLPWVSTT 364


>At4g28910.1 68417.m04131 expressed protein
          Length = 425

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 308 KPARQADAREGGDSTRPWLRWTPTT 234
           KP   AD + GG   RP L W  TT
Sbjct: 340 KPGMAADVKFGGSGARPNLPWVSTT 364


>At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 170

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 269 NRLPRAHRPGVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGTTRRHRD 430
           ++L  +    +P SP+ +  TTT +TA  C I G +     ++ G G  R+HR+
Sbjct: 59  SKLTNSDDKSLPGSPKKKPKTTTTTTAHTCPICG-LEFPMGQALG-GHMRKHRN 110


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 824 PYRYXQNKPPNCSWFPXSPXXEYQLLHTPQLFPGSIPP 711
           P  Y  N PP  S++  SP  +Y+    P ++    PP
Sbjct: 280 PPPYIYNSPPPPSYYSPSPKIDYKSPPPPYVYSSPPPP 317


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 824 PYRYXQNKPPNCSWFPXSPXXEYQLLHTPQLFPGSIPP 711
           P  Y  N PP  +++  SP  EY+    P ++    PP
Sbjct: 838 PPPYVYNSPPPPAYYSPSPKIEYKSPPPPYVYSSPPPP 875


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,168,213
Number of Sequences: 28952
Number of extensions: 428902
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)