Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0952
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.46 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   4.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.6  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.8  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 497 CTFVSLSIPTSHDKSEILLYLLKIVK----RFSNHTTTQPNTDVKHAASNKYCSYI 652
           C  +S+ I  SH  +    YLLKI+K    R+ +    Q   DV H   N+   Y+
Sbjct: 561 CISLSIKIAVSHKLTNDETYLLKILKNFQLRYHDSLQLQEKCDVLHTTFNQLDLYV 616


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -1

Query: 585 FEKRLTIFNK*SRISLLSCEVGIERETKVQTSMRIEDPSPLSQA---QY*YTSFSLRRWL 415
           F ++L +  K S +S +   + IE  T+  +++R+ED  PL+ A    Y YT   L  W 
Sbjct: 643 FLRKLLLQKKKSSVSNI---IYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTLLSPWH 699

Query: 414 IFTR 403
           + +R
Sbjct: 700 LDSR 703


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 494 VCTFVSLSIPTSHDKSEILLYLLKIVKRFSNHTTTQPNTDVKHAASNKYCSY---INIQK 664
           +CTF    I  + D+   L +  +++  +S+H  T    D+K+  S   C++   +N + 
Sbjct: 441 ICTFAKWCINNNLDEPSNLKHFREMLDYYSSHNVTISEDDLKN-FSLVLCTHVAKVNEKT 499

Query: 665 NMILKLF 685
           N I + +
Sbjct: 500 NSIFRTY 506


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 796 YQLVKHKLRIARNKNLLHCSLIIKHLHKFLY 704
           + L K K R   +  + HCS  ++H H  +Y
Sbjct: 589 WYLSKQKRRPVEDPEVRHCSQTLRHWHDDIY 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,562
Number of Sequences: 5004
Number of extensions: 68087
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)