BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0952 (822 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 0.46 SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 4.3 SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.6 SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.8 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 29.9 bits (64), Expect = 0.46 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +2 Query: 497 CTFVSLSIPTSHDKSEILLYLLKIVK----RFSNHTTTQPNTDVKHAASNKYCSYI 652 C +S+ I SH + YLLKI+K R+ + Q DV H N+ Y+ Sbjct: 561 CISLSIKIAVSHKLTNDETYLLKILKNFQLRYHDSLQLQEKCDVLHTTFNQLDLYV 616 >SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1347 Score = 26.6 bits (56), Expect = 4.3 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = -1 Query: 585 FEKRLTIFNK*SRISLLSCEVGIERETKVQTSMRIEDPSPLSQA---QY*YTSFSLRRWL 415 F ++L + K S +S + + IE T+ +++R+ED PL+ A Y YT L W Sbjct: 643 FLRKLLLQKKKSSVSNI---IYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTLLSPWH 699 Query: 414 IFTR 403 + +R Sbjct: 700 LDSR 703 >SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 2386 Score = 26.2 bits (55), Expect = 5.6 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +2 Query: 494 VCTFVSLSIPTSHDKSEILLYLLKIVKRFSNHTTTQPNTDVKHAASNKYCSY---INIQK 664 +CTF I + D+ L + +++ +S+H T D+K+ S C++ +N + Sbjct: 441 ICTFAKWCINNNLDEPSNLKHFREMLDYYSSHNVTISEDDLKN-FSLVLCTHVAKVNEKT 499 Query: 665 NMILKLF 685 N I + + Sbjct: 500 NSIFRTY 506 >SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1 complex subunit Tpr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1039 Score = 25.4 bits (53), Expect = 9.8 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = -3 Query: 796 YQLVKHKLRIARNKNLLHCSLIIKHLHKFLY 704 + L K K R + + HCS ++H H +Y Sbjct: 589 WYLSKQKRRPVEDPEVRHCSQTLRHWHDDIY 619 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,237,562 Number of Sequences: 5004 Number of extensions: 68087 Number of successful extensions: 148 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 148 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 402440190 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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