Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0952
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   5e-06
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             28   8.0  

>SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 235 PHFRVDETTGGAQGVGEVPPGGINALLEVGQSLAQQMQAANPDLVEQLRRQLRPP-GSGE 411
           P  RV    GGA G G    GG+  L +  QS   QMQ  NP+L EQLR Q +   G+  
Sbjct: 128 PCNRVGNMMGGAGGGGGASGGGMTNLFQAAQSFGDQMQQTNPELFEQLRTQAQASMGTST 187

Query: 412 NQP 420
           N P
Sbjct: 188 NTP 190


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 441 CISIEPVRGDWDP-QFSYWSVLLSLSQFQLHMI 536
           CIS+ P+R DW+  +FS WS   SL  ++  ++
Sbjct: 205 CISVFPLRSDWNRIRFSLWSGYFSLRDWRPSLV 237


>SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 560 TNKVEFHSYHVKLELRERQKY-RPV*ELRIPVPSH 459
           TN+   HSY VKLE +   ++   V +L +P PSH
Sbjct: 452 TNRTRKHSYDVKLETKYGSQHGARVKKLSVPDPSH 486


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 422 LLSENDVY*Y*ACERGLGSSILILVCTFVSLSIPTSHDK 538
           LL++ D Y    C++    S+  L+CT V+LS+P+ H +
Sbjct: 313 LLNKQDFYRSPECDQAF-ESLKHLLCTSVTLSLPSQHGR 350


>SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 578 FSNHTTTQPNTDVKHAASNKYCSYINIQKNMI 673
           +  H    P++  KH+  NK+ SY+   KN I
Sbjct: 389 YGEHPNVGPSSPDKHSVDNKHDSYLRSNKNEI 420


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -3

Query: 265 PLSFHQP*NEVLHIRVSEHLRSHG*SKPGFRSKPPP 158
           P  FHQP     H R     R+H  S PG    PPP
Sbjct: 311 PQDFHQPAGHSPHSRPIR--RTHSSSSPGVPPSPPP 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,098,367
Number of Sequences: 59808
Number of extensions: 511302
Number of successful extensions: 1250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)