BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0952 (822 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06 SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5 SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0 SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) 28 8.0 >SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 231 Score = 48.8 bits (111), Expect = 5e-06 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +1 Query: 235 PHFRVDETTGGAQGVGEVPPGGINALLEVGQSLAQQMQAANPDLVEQLRRQLRPP-GSGE 411 P RV GGA G G GG+ L + QS QMQ NP+L EQLR Q + G+ Sbjct: 128 PCNRVGNMMGGAGGGGGASGGGMTNLFQAAQSFGDQMQQTNPELFEQLRTQAQASMGTST 187 Query: 412 NQP 420 N P Sbjct: 188 NTP 190 >SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2973 Score = 30.7 bits (66), Expect = 1.5 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +3 Query: 441 CISIEPVRGDWDP-QFSYWSVLLSLSQFQLHMI 536 CIS+ P+R DW+ +FS WS SL ++ ++ Sbjct: 205 CISVFPLRSDWNRIRFSLWSGYFSLRDWRPSLV 237 >SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 698 Score = 29.1 bits (62), Expect = 4.6 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -2 Query: 560 TNKVEFHSYHVKLELRERQKY-RPV*ELRIPVPSH 459 TN+ HSY VKLE + ++ V +L +P PSH Sbjct: 452 TNRTRKHSYDVKLETKYGSQHGARVKKLSVPDPSH 486 >SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 848 Score = 29.1 bits (62), Expect = 4.6 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +2 Query: 422 LLSENDVY*Y*ACERGLGSSILILVCTFVSLSIPTSHDK 538 LL++ D Y C++ S+ L+CT V+LS+P+ H + Sbjct: 313 LLNKQDFYRSPECDQAF-ESLKHLLCTSVTLSLPSQHGR 350 >SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 768 Score = 28.7 bits (61), Expect = 6.0 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 578 FSNHTTTQPNTDVKHAASNKYCSYINIQKNMI 673 + H P++ KH+ NK+ SY+ KN I Sbjct: 389 YGEHPNVGPSSPDKHSVDNKHDSYLRSNKNEI 420 >SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) Length = 667 Score = 28.3 bits (60), Expect = 8.0 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -3 Query: 265 PLSFHQP*NEVLHIRVSEHLRSHG*SKPGFRSKPPP 158 P FHQP H R R+H S PG PPP Sbjct: 311 PQDFHQPAGHSPHSRPIR--RTHSSSSPGVPPSPPP 344 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,098,367 Number of Sequences: 59808 Number of extensions: 511302 Number of successful extensions: 1250 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1067 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1245 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2299585728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -