Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0952
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.16 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.9  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 563 KIVKRFSNHTTTQPNTDVKHAASNKYCSYINIQKNMILKLFWFTILHIEKL 715
           KI+   SN T    N    +  +N Y +Y N   N   KL+ + I++IE++
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY-YNIINIEQI 362


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 560 LKIVKRFSNHTTTQPNTDVKHAASNKYCSYIN 655
           +KI+K+ S++   + N +     SNKY    N
Sbjct: 354 IKIIKQISSNIYERQNNEYIWIVSNKYQKIAN 385


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 744 CNKFLFRAILSLCLTN 791
           C  F+F A++  CL N
Sbjct: 314 CTVFVFMALMEYCLVN 329


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 46   SRALXTPRAAQLAPENESY 102
            SR    PR AQ + E+ESY
Sbjct: 1336 SRRTPVPRLAQDSSEDESY 1354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,908
Number of Sequences: 438
Number of extensions: 5103
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)