Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0951
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    54   3e-08
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    27   3.3  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   4.4  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = +1

Query: 256 LYRFTFKFGLDVSSGQRILPSDIAIVLWRLVFTNNEPPILDRWLNYLEKNPQI-RGIPKD 432
           +Y +T+    D   G++ L + IAI  ++++  +  P +LD W+ +L+ +P I + +PKD
Sbjct: 147 IYIYTYPLACD--KGKKTLSTSIAIEFFQILLKDTFP-LLDDWIAFLKVSPIIEKSLPKD 203

Query: 433 TWYMFLNFCEFVGND--LSSYDDTEAWP 510
           TW    +F  FV +D   S+YD   AWP
Sbjct: 204 TWNELWDFSVFVKSDPNCSNYDFEGAWP 231


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 373 LDRWLNYLEKNPQIRGIPKDTWYMFLNF 456
           + R ++ ++ +P+ RG P DT+Y+F N+
Sbjct: 375 VSRPISSVQFHPEARGGPMDTFYLFDNY 402


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 304 RILPSDIAIVLWRLVFTNNEPPILDRWLNYLEKNPQIRGI 423
           RILP DI  ++ +L+  N   P L  W    +     RG+
Sbjct: 278 RILPIDIRRIMSKLIVFNGILPSLPGWYQRFQNEMTSRGL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,841
Number of Sequences: 5004
Number of extensions: 64502
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)