Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0951
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_22777| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  

>SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score =  116 bits (280), Expect = 2e-26
 Identities = 51/94 (54%), Positives = 66/94 (70%)
 Frame = +1

Query: 229 AKRTRAI*GLYRFTFKFGLDVSSGQRILPSDIAIVLWRLVFTNNEPPILDRWLNYLEKNP 408
           AK       LYRFTFKFGLDV  GQR LP+ IAI LW+LVF+   P +L++W  YL +  
Sbjct: 161 AKDVEKFKDLYRFTFKFGLDVEEGQRALPTSIAIALWKLVFSKKPPLVLEKWFAYLGQR- 219

Query: 409 QIRGIPKDTWYMFLNFCEFVGNDLSSYDDTEAWP 510
           ++RGI +DTW MF NF E + +D ++YDD+EAWP
Sbjct: 220 EVRGISRDTWNMFWNFTETIDSDFTNYDDSEAWP 253



 Score =  101 bits (241), Expect = 1e-21
 Identities = 42/79 (53%), Positives = 60/79 (75%)
 Frame = +2

Query: 17  EDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNMKTDSIKGI 196
           ED+ILA+G+E  C DL + P +F VL+LAWK +ASQMCRFT+ EF+ G K +K DSIKG+
Sbjct: 90  EDSILADGMEKFCQDLGVDPTEFVVLVLAWKFDASQMCRFTRKEFIDGCKAVKADSIKGL 149

Query: 197 QHKLGDISVEMQREPEQFK 253
           Q+K  ++  E+ ++ E+FK
Sbjct: 150 QNKFPELEEEVAKDVEKFK 168


>SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = +2

Query: 17  EDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNM 172
           +D ILAEGI + C DL+L P   KVLI+AWK  A+  C F++ EF  G+  +
Sbjct: 77  DDKILAEGISHFCQDLSLDPASLKVLIIAWKFRAATQCEFSRKEFTDGMTEL 128


>SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 421 IPKDTWYMFLNFCEFVGNDLSSYDDTEAWPV 513
           I +D W   L F   +  DLS+YD+  AWPV
Sbjct: 142 INRDQWCNVLEFSRTIEVDLSNYDEDGAWPV 172


>SB_22777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 791 FHNNFFPSKHTQSLIPDYL---ILXSTFIIY*FSEIRLTTILTKYSFISL 651
           FH+NF PS +T   I +YL   IL +T  I  FS +R  ++L    F S+
Sbjct: 96  FHDNFSPSGNTVKCIRNYLGFTILDTTTTI--FSILRYKSVLLSVFFTSI 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,352,866
Number of Sequences: 59808
Number of extensions: 421298
Number of successful extensions: 2973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2972
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)