Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0951
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL024499-2|CAB54260.2| 242|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL024499-1|CAB54261.2| 295|Caenorhabditis elegans Hypothetical ... 54 1e-07
AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical... 31 1.0
AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical ... 31 1.0
Z82278-7|CAJ43451.1| 416|Caenorhabditis elegans Hypothetical pr... 30 2.4
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 29 5.5
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 29 5.5
Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81454-3|CAB03799.2| 378|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z74035-4|CAA98483.1| 373|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a prot... 28 7.3
Z83219-2|CAB05695.1| 377|Caenorhabditis elegans Hypothetical pr... 28 9.6
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 28 9.6
AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical ... 28 9.6
>AL024499-2|CAB54260.2| 242|Caenorhabditis elegans Hypothetical
protein H38K22.2b protein.
Length = 242
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +2
Query: 38 GIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNMKTDSIKGIQHKLGDI 217
GI L DL D +VL+LAWK A C F+ E+V+G+ ++ D+++ ++ ++ I
Sbjct: 35 GINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSI 94
Query: 218 SVEMQREPEQF 250
+ ++ + +F
Sbjct: 95 NSGLESDKAKF 105
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Frame = +1
Query: 256 LYRFTFKFGLDVSSGQRILPSDIAIVLWRLVFTNNEPPILDRWLNYL--EKNP------- 408
LY F F + S+ R L + AI W ++F I+ +W+++L ++N
Sbjct: 108 LYLFAFNYAK--SAACRNLDLETAICCWDVLF-GQRSTIMTQWIDFLWAQENAAASRLAQ 164
Query: 409 --------QIRG--IPKDTWYMFLNFCEFVGNDLSSYDDTEAWPV 513
Q + I +DTW +F +F DLS YDD AWPV
Sbjct: 165 NVGASNAKQFKSVWISRDTWNLFWDFILLSKPDLSDYDDEGAWPV 209
>AL024499-1|CAB54261.2| 295|Caenorhabditis elegans Hypothetical
protein H38K22.2a protein.
Length = 295
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +2
Query: 38 GIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNMKTDSIKGIQHKLGDI 217
GI L DL D +VL+LAWK A C F+ E+V+G+ ++ D+++ ++ ++ I
Sbjct: 88 GINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSI 147
Query: 218 SVEMQREPEQF 250
+ ++ + +F
Sbjct: 148 NSGLESDKAKF 158
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Frame = +1
Query: 256 LYRFTFKFGLDVSSGQRILPSDIAIVLWRLVFTNNEPPILDRWLNYL--EKNP------- 408
LY F F + S+ R L + AI W ++F I+ +W+++L ++N
Sbjct: 161 LYLFAFNYAK--SAACRNLDLETAICCWDVLF-GQRSTIMTQWIDFLWAQENAAASRLAQ 217
Query: 409 --------QIRG--IPKDTWYMFLNFCEFVGNDLSSYDDTEAWPV 513
Q + I +DTW +F +F DLS YDD AWPV
Sbjct: 218 NVGASNAKQFKSVWISRDTWNLFWDFILLSKPDLSDYDDEGAWPV 262
>AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical
protein C08E3.11 protein.
Length = 148
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 451 NFCEFVGNDLSSYDDTEAW 507
NFC VGND+ SY+D + W
Sbjct: 32 NFCRNVGNDVMSYNDFDFW 50
>AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical
protein C08E3.8 protein.
Length = 431
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 451 NFCEFVGNDLSSYDDTEAW 507
NFC VGND+ SY+D + W
Sbjct: 32 NFCRNVGNDVMSYNDFDFW 50
>Z82278-7|CAJ43451.1| 416|Caenorhabditis elegans Hypothetical
protein M162.11 protein.
Length = 416
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 412 IRGIPKDTWYMFLNFCEFVGNDLSSYDDTEAW 507
++G P T F NFCE +GND+ Y + + W
Sbjct: 42 LQGTP--TLKAFGNFCEAIGNDVIEYREFDYW 71
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 447 KHVPCIFWNASDLWVLLK-VIQPSIQDWRLIIC 352
++ P + WN S LW + IQ S Q W I C
Sbjct: 264 RNCPYVSWNVSSLWRHFRHHIQKSKQSWTCIAC 296
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 447 KHVPCIFWNASDLWVLLK-VIQPSIQDWRLIIC 352
++ P + WN S LW + IQ S Q W I C
Sbjct: 264 RNCPYVSWNVSSLWRHFRHHIQKSKQSWTCIAC 296
>Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical
protein B0391.11 protein.
Length = 378
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 445 FLNFCEFVGNDLSSYDDTEAW 507
+ NFCE +G+D+ Y D E W
Sbjct: 30 YKNFCEKLGDDVMDYIDFEFW 50
>Z81454-3|CAB03799.2| 378|Caenorhabditis elegans Hypothetical
protein B0391.5 protein.
Length = 378
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 445 FLNFCEFVGNDLSSYDDTEAW 507
+ NFCE +G+D+ Y D E W
Sbjct: 30 YKNFCEKLGDDVMDYVDFEFW 50
>Z74035-4|CAA98483.1| 373|Caenorhabditis elegans Hypothetical
protein F47G9.6 protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 800 LFKFHNNFFPSKHTQSLIPDYLILXSTFII---Y*FSEIRLTTILTKYSFISLNI 645
LF + NN+FP+++ D++ + F+ Y F I + T L YS I +
Sbjct: 147 LFAYTNNYFPAQYYGCQYRDHMSIHYKFVRTLGYAFEPISIPTNLPIYSLIETEV 201
>AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a protein
protein 222 protein.
Length = 377
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 445 FLNFCEFVGNDLSSYDDTEAW 507
+ NFCE +G+D+ Y D E W
Sbjct: 30 YKNFCEKLGDDVMDYIDFEFW 50
>Z83219-2|CAB05695.1| 377|Caenorhabditis elegans Hypothetical
protein C31C9.3 protein.
Length = 377
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 445 FLNFCEFVGNDLSSYDDTEAW 507
F NFC GND Y + E W
Sbjct: 30 FKNFCNAFGNDFMEYREFERW 50
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 427 KDTWYMFLNFCEFVGNDLSSYDDTEAW 507
K + +L+FC+ VG+D Y + + W
Sbjct: 36 KSVYESYLSFCDAVGDDFMEYREFDFW 62
>AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical
protein F45C12.8 protein.
Length = 297
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 445 FLNFCEFVGNDLSSYDDTEAW 507
F NFC VGND+ Y + + W
Sbjct: 13 FDNFCRKVGNDVMPYSEFDFW 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,204
Number of Sequences: 27780
Number of extensions: 342759
Number of successful extensions: 847
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -